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[176747_s_at]

Description F56C9.1 /REP_DB=WormBase Gene ID /WP=CE01319 /GB=AAK18957.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 12      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2457
1 2 3 4 range
A 1537.5
(-0.8)
P 		1045.5
(-2.1)
P 		697
(-3)
P 		2947.8
(3)
P 		2251
B 1699.2
(-0.5)
P 		958.1
(-2.3)
P 		682.3
(-3)
P 		3138.8
(3)
P 		2457
C 1545.2
(-0.7)
P 		874.8
(-2.6)
P 		712.1
(-3)
P 		2883.4
(3)
P 		2171
avr 1594
(-0.7) 		959.5
(-2.3) 		697.1
(-3) 		2990
(3) 		2293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 912
1 2 3 4 5 6 range
A 1124.1
(3)
P 		776.6
(0.1)
P 		415
(-3)
P 		495.9
(-2.3)
P 		489.6
(-2.4)
P 		612.3
(-1.3)
P 		709
B 987.3
(3)
P 		788.9
(0.8)
P 		516.6
(-2.3)
P 		501.6
(-2.5)
P 		454.9
(-3)
P 		465.6
(-2.9)
P 		532
C 1314.9
(3)
P 		775.8
(-0.5)
P 		572.5
(-1.9)
P 		402.7
(-3)
P 		449.5
(-2.7)
P 		514.7
(-2.3)
P 		912
avr 1142.1
(3) 		780.4
(-0.2) 		501.4
(-2.7) 		466.7
(-3) 		464.7
(-3) 		530.9
(-2.4) 		677
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 559.8
(3)
P 		227
(-2.3)
P 		182.2
(-3)
P 		431.5
(1)
P 		378
B 541.8
(1.5)
P 		236.6
(-2.1)
P 		158.1
(-3)
P 		668.9
(3)
P 		511
C 511.5
(3)
P 		251.5
(-2.9)
P 		248.2
(-3)
P 		486.2
(2.4)
P 		263
avr 537.7
(3) 		238.4
(-2.3) 		196.2
(-3) 		528.9
(2.8) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 207.2
(0.8)
P 		276.2
(3)
P 		90.4
(-3)
P 		125.8
(-1.9)
P 		147.7
(-1.1)
P 		149.1
(-1.1)
P 		186
B 343.5
(3)
P 		262.6
(0.8)
P 		125.4
(-3)
P 		132.9
(-2.8)
P 		184.8
(-1.4)
P 		173.6
(-1.7)
P 		218
C 487.4
(3)
P 		236.7
(-0.7)
P 		145.7
(-2)
P 		81
(-3)
P 		145.4
(-2)
P 		172.3
(-1.7)
P 		406
avr 346
(3) 		258.5
(0.7) 		120.5
(-2.8) 		113.2
(-3) 		159.3
(-1.8) 		165
(-1.7) 		233
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176747_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8052
Sequence Type Exemplar sequence
Representative Public ID F56C9.1 NCBI
Target Description F56C9.1 /REP_DB=WormBase Gene ID /WP=CE01319 /GB=AAK18957.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027445 NCBI Caenorhabditis elegans yeast Glc Seven-like Phosphatases family member (gsp-2) (gsp-2) mRNA, complete cds. 11/11 None
SNAP00000032859 ENSEMBL cdna:SNAP chromosome:CEL140:III:7336545:7338111:1 11/11 None
GENEFINDER00000032870 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7336545:7338111:1 11/11 None
F56C9.1.1 ENSEMBL cdna:known chromosome:CEL140:III:7336508:7343568:1 gene:F56C9.1 11/11 None
F56C9.1.2 ENSEMBL cdna:known chromosome:CEL140:III:7336509:7338111:1 gene:F56C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7336542-7338109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gsp-2
Ensembl F56C9.1
Entrez Gene 3564807 Entrez gene
SwissProt P48727 EMBL-EBI
WormBase CE01319 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20314_S_AT serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) at
ATH1-121501:254923_AT serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) at
CANINE:1582493_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
CANINE_2:CFAAFFX.18039.1.S1_S_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
CANINE_2:CFA.3471.1.S1_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
DROSOPHILA_2:1625806_AT Protein phosphatase 1 at 96A dm
DROSGENOME1:143310_AT Protein phosphatase 1 at 96A dm
HG-U133_PLUS_2:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U133A:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-FOCUS:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U133A_2:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
U133_X3P:G4506002_3P_A_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U95AV2:32157_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U95D:74577_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
MOUSE430_2:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MOE430A:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MOUSE430A_2:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBA:AA218341_S_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.3454.0_F_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.10308.0_F_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MG-U74CV2:134841_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MG-U74BV2:165128_R_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.29209.0_S_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBB:TC31824_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBC:TC36035_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBC:TC39781_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
RG-U34A:S78215_S_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RG-U34C:RC_AA817897_S_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RAE230A:1386863_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RAT230_2:1386863_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
YEAST_2:1777225_AT Catalytic subunit of type 1 serine/threonine protein phosphatase, involved in many processes including glycogen metabolism, sporulation, and mitosis; interacts with multiple regulatory subunits; predominantly isolated with Sds22p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18957 Yeast glc seven-like phosphatases protein 2 [Caenorhabditis elegans] ref|NP_001022616.1| yeast Glc Seven-like Phosphatases family member (gsp-2) [Caenorhabditis elegans] sp|P48727|YMEX_CAEEL Putative serine/threonine protein phosphatase F56C9.1 in chromosome III 0.0
blast CAE57617 Hypothetical protein CBG00598 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.7E-44
Sequence
Target Sequence 
>C. ELEGANS:176747_S_AT
ttcaccgattgctttaactgcctgccagttgccgccatcatcgacgaaaagatcttctgc
tgtcacggaggactttctccagatcttcagtctatggagcaaattcgtcgtatcatgagg
ccgacagacgtaccagatcaaggattgttgtgcgatctgttgtggtcagatcctgataaa
gatgtcactggctggggagaaaacgaccgaggcgtctctttcactttcggaccagaagtt
gttgccaaattcctgcacaagcacgatttggatttgatttgcagagctcaccaggttgtg
gaagacggttacgaattcttcgctaagcggcagttggttacattgttcagcgctcctaat
tattgtggagagtttgataacgcgggatcgatgatgactgtcgatgaaacactgatgtgc
tctttccagatcttgaaaccagcagacaagaagaaatatccatatggtgctggaggagtt
ggttcaaatagaccagtcaccccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACCGATTGCTTTAACTGCCTGC 515 687 463 Antisense
GAGGACTTTCTCCAGATCTTCAGTC 84 405 530 Antisense
ATGAGGCCGACAGACGTACCAGATC 550 21 577 Antisense
ATTGTTGTGCGATCTGTTGTGGTCA 672 3 606 Antisense
GAGAAAACGACCGAGGCGTCTCTTT 77 393 659 Antisense
GTTGTTGCCAAATTCCTGCACAAGC 471 437 700 Antisense
TGATTTGCAGAGCTCACCAGGTTGT 189 563 737 Antisense
GCGGCAGTTGGTTACATTGTTCAGC 1 293 789 Antisense
ATTGTTCAGCGCTCCTAATTATTGT 198 3 804 Antisense
TGAAACACTGATGTGCTCTTTCCAG 462 573 867 Antisense
GGTTCAAATAGACCAGTCACCCCAC 303 507 943 Antisense
Sequence Source Affymetrix Proprietary Database