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[176745_at]

Description C18C4.7 /REP_DB=WormBase Gene ID /WP=CE06852 /GB=AAK52179.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 67
(-3)
A 		83.4
(-0.9)
A 		76.8
(-1.8)
A 		114.6
(3)
A 		48
B 74.7
(2.8)
P 		40.1
(-1.7)
A 		30
(-3)
A 		76.6
(3)
A 		47
C 45.2
(-2.1)
A 		73.3
(-0.9)
A 		25
(-3)
A 		166.1
(3)
P 		141
avr 62.3
(-1.5) 		65.6
(-1.3) 		43.9
(-3) 		119.1
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 69
(3)
M 		30.5
(-2.5)
A 		53.9
(0.8)
A 		32.2
(-2.3)
A 		40.5
(-1.1)
A 		27.1
(-3)
A 		42
B 34.6
(-1.7)
A 		48.9
(1.2)
A 		58.1
(3)
A 		38.6
(-0.9)
A 		52.5
(1.9)
P 		27.8
(-3)
A 		30
C 56.8
(-0.1)
A 		111.1
(3)
M 		16.6
(-2.4)
A 		6.6
(-3)
A 		41.4
(-1)
A 		57.6
(-0.1)
A 		105
avr 53.5
(1.4) 		63.5
(3) 		42.9
(-0.3) 		25.8
(-3) 		44.8
(0) 		37.5
(-1.1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.4
(3)
A 		18.1
(-2)
A 		20.1
(-0.4)
A 		16.8
(-3)
A 		8
B 23.8
(3)
P 		9.9
(-2)
A 		7
(-3)
A 		16.3
(0.3)
A 		17
C 14.9
(-1.1)
A 		21.1
(0.9)
A 		8.7
(-3)
A 		28
(3)
P 		19
avr 21
(3) 		16.4
(-0) 		11.9
(-3) 		20.4
(2.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 12.7
(3)
M 		10.9
(1.2)
A 		11.7
(2)
A 		8.2
(-1.4)
A 		12.2
(2.5)
A 		6.6
(-3)
A 		6
B 12.1
(-2)
A 		16.3
(0.3)
A 		14.1
(-0.9)
A 		10.2
(-3)
A 		21.3
(3)
P 		10.4
(-2.9)
A 		11
C 21.1
(0.6)
A 		33.9
(3)
M 		4.2
(-2.5)
A 		1.3
(-3)
A 		13.4
(-0.8)
A 		19.3
(0.3)
A 		33
avr 15.3
(0.8) 		20.4
(3) 		10
(-1.5) 		6.6
(-3) 		15.6
(0.9) 		12.1
(-0.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11268
Sequence Type Exemplar sequence
Representative Public ID C18C4.7 NCBI
Target Description C18C4.7 /REP_DB=WormBase Gene ID /WP=CE06852 /GB=AAK52179.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072067 NCBI Caenorhabditis elegans C18C4.7 (C18C4.7) mRNA, complete cds. 11/11 None
SNAP00000035603 ENSEMBL cdna:SNAP chromosome:CEL140:V:5564132:5569807:-1 11/11 None
GENEFINDER00000035612 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5566901:5573108:-1 10/11 None
C18C4.7 ENSEMBL cdna:known chromosome:CEL140:V:5568782:5569807:-1 gene:C18C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5568781-5569807(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18C4.7
Entrez Gene 182778 Entrez gene
SwissProt Q18085 EMBL-EBI
WormBase CE06852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK52180 Hypothetical protein C18C4.9 [Caenorhabditis elegans] ref|NP_504469.1| C18C4.9 [Caenorhabditis elegans] 0.0
blast CAE64612 Hypothetical protein CBG09369 [Caenorhabditis briggsae] 1.0E-165
blast T34112 hypothetical protein C18C4.9 - Caenorhabditis elegans 1.0E-151
blast AAK52179 Hypothetical protein C18C4.7 [Caenorhabditis elegans] ref|NP_504468.1| C18C4.7 [Caenorhabditis elegans] 1.0E-104
blast AAK52179 Hypothetical protein C18C4.7 [Caenorhabditis elegans] ref|NP_504468.1| C18C4.7 [Caenorhabditis elegans] 2.0E-91
blast AAK52178 Hypothetical protein C18C4.6 [Caenorhabditis elegans] ref|NP_504467.1| C18C4.6 [Caenorhabditis elegans] 5.0E-33
blast CAE64613 Hypothetical protein CBG09370 [Caenorhabditis briggsae] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:176745_AT
tgggcacagccaatttttatccgattaatgtcaactcaatcatcccagatggaattgtac
gtgagagacgtcagtttttcgtttcaaatgatatgaacatgacgaacgttaatggtgata
gtcagaaattcgaaggttacactcataaaagtggtctggatttttactcgccaggaaata
atagaaacaaaatatatccaacggtcaacgccagaacaccaatgagaccggcaattgtct
acgttggaactgtcagttcttatgaaaactacaaaagtccaatatctgactatcaaaacg
agaaaaatcacccatcattcgtcgttacagtaagatctcatccgccttaccaagacactg
ggcaaaatcgttggtatcgcgaagtgcgacatgatgccaattatgatgcaccgacgttgt
cagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCACAGCCAATTTTTATCCGAT 74 555 35 Antisense
ATGTCAACTCAATCATCCCAGATGG 184 49 62 Antisense
GTGAGAGACGTCAGTTTTTCGTTTC 101 481 95 Antisense
AAGTGGTCTGGATTTTTACTCGCCA 88 159 183 Antisense
TATATCCAACGGTCAACGCCAGAAC 87 659 227 Antisense
AACGCCAGAACACCAATGAGACCGG 471 145 241 Antisense
GACCGGCAATTGTCTACGTTGGAAC 123 383 260 Antisense
TCACCCATCATTCGTCGTTACAGTA 416 625 342 Antisense
TCCGCCTTACCAAGACACTGGGCAA 571 595 375 Antisense
CGCGAAGTGCGACATGATGCCAATT 683 253 412 Antisense
TATGATGCACCGACGTTGTCAGTGA 86 657 436 Antisense
Sequence Source Affymetrix Proprietary Database