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[176743_s_at]

Description F56D6.1 /REP_DB=WormBase Gene ID /WP=CE17906 /GB=AAC17546.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      6grp_highest_nonorm > 42      6grp_total > 50      4grp_total > 62      6grp_highest_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1972
1 2 3 4 range
A 2000.5
(3)
P 		828.3
(-0.6)
P 		1298.8
(0.8)
P 		43.2
(-3)
A 		1957
B 1738.7
(3)
P 		1044.7
(0.6)
P 		1306.6
(1.5)
P 		28.9
(-3)
A 		1710
C 1763.6
(3)
P 		844.5
(-0.3)
P 		1163.7
(0.9)
P 		77.6
(-3)
A 		1686
avr 1834.3
(3) 		905.8
(-0.1) 		1256.4
(1.1) 		49.9
(-3) 		1784

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1058
1 2 3 4 5 6 range
A 999.3
(-0.1)
P 		910
(-0.7)
P 		943.7
(-0.5)
P 		1492.5
(3)
P 		638.4
(-2.4)
P 		541.8
(-3)
P 		951
B 991.4
(2)
P 		940.3
(1.6)
P 		882.4
(1.1)
P 		1096.4
(3)
P 		759.6
(-0.1)
P 		434.1
(-3)
P 		662
C 1191.3
(3)
P 		859.8
(0.3)
P 		1166.9
(2.8)
P 		1099.5
(2.3)
P 		823.7
(0.1)
P 		441.9
(-3)
P 		749
avr 1060.7
(1.7) 		903.4
(0.4) 		997.7
(1.2) 		1229.5
(3) 		740.6
(-0.9) 		472.6
(-3) 		757
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 722
1 2 3 4 range
A 728.4
(3)
P 		179.8
(-1.6)
P 		339.5
(-0.2)
P 		6.3
(-3)
A 		722
B 554.5
(3)
P 		258
(-0.2)
P 		302.8
(0.2)
P 		6.2
(-3)
A 		548
C 583.8
(3)
P 		242.8
(-0.6)
P 		405.6
(1.1)
P 		13.1
(-3)
A 		571
avr 622.2
(3) 		226.9
(-0.9) 		349.3
(0.3) 		8.5
(-3) 		614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 184.2
(-1.7)
P 		323.6
(1.7)
P 		205.5
(-1.2)
P 		378.5
(3)
P 		192.6
(-1.5)
P 		131.9
(-3)
P 		247
B 345
(3)
P 		313
(2)
P 		214.3
(-1.3)
P 		290.4
(1.2)
P 		308.6
(1.8)
P 		161.9
(-3)
P 		183
C 441.5
(3)
P 		262.3
(-0.7)
P 		297
(0)
P 		221.1
(-1.5)
P 		266.5
(-0.6)
P 		147.9
(-3)
P 		294
avr 323.6
(3) 		299.6
(2.2) 		238.9
(0.1) 		296.7
(2.1) 		255.9
(0.7) 		147.2
(-3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176743_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11055
Sequence Type Exemplar sequence
Representative Public ID F56D6.1 NCBI
Target Description F56D6.1 /REP_DB=WormBase Gene ID /WP=CE17906 /GB=AAC17546.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068037(11), NM_068036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068037 NCBI Caenorhabditis elegans F56D6.1 (F56D6.1) mRNA, complete cds. 11/11 A 
NM_068036 NCBI Caenorhabditis elegans F56D6.2 (F56D6.2) mRNA, complete cds. 11/11 A 
SNAP00000037038 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3922189:3925464:1 11/11 None
F56D6.2 ENSEMBL cdna:known chromosome:CEL140:IV:3922159:3925039:1 gene:F56D6.2 11/11 A 
F56D6.1 ENSEMBL cdna:known chromosome:CEL140:IV:3926424:3931568:1 gene:F56D6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037040 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3926429-3931407(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F56D6.2
F56D6.1
Entrez Gene 177151 Entrez gene
186388 Entrez gene
SwissProt Q8ITX4 EMBL-EBI
WormBase CE32680 Wormbase
CE31546 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500438 F56D6.1 [Caenorhabditis elegans] 0.0
blast ABA54415 Hypothetical protein F56D6.1 [Caenorhabditis elegans] 0.0
blast ABA54416 Hypothetical protein F56D6.15 [Caenorhabditis elegans] 0.0
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 0.0
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 0.0
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 6.0E-23
Sequence
Target Sequence 
>C. ELEGANS:176743_S_AT
attacaaccaagcctactcatacttgtccactaatctaccagattctacattgggatacg
gagatagtacgaaaggaagtaatgtgttagatgttattaataccttctacagcagccccg
cttgtggatcagttgtcatagttttatcgaaacgttatcctaacaccacggatatctcaa
acacagtggctaaagttcgtcaataccatggaatagtcaacttccttgcttcaaatactc
catcaggtggcacacagtctcgagtgctctttgatcttgcctccaaaacgaatggaattt
actcgatcgacgatgactcaactttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACAACCAAGCCTACTCATACTT 151 11 1814 Antisense
ACAACCAAGCCTACTCATACTTGTC 291 113 1817 Antisense
GTTATCCTAACACCACGGATATCTC 562 447 1967 Antisense
AACACAGTGGCTAAAGTTCGTCAAT 435 135 1993 Antisense
GTGGCTAAAGTTCGTCAATACCATG 341 491 1999 Antisense
GTTCGTCAATACCATGGAATAGTCA 133 441 2008 Antisense
GAATAGTCAACTTCCTTGCTTCAAA 632 325 2024 Antisense
AACTTCCTTGCTTCAAATACTCCAT 294 139 2032 Antisense
TACTCCATCAGGTGGCACACAGTCT 272 645 2049 Antisense
CTCTTTGATCTTGCCTCCAAAACGA 72 229 2080 Antisense
CGATCGACGATGACTCAACTTTCTC 396 247 2117 Antisense
Sequence Source Affymetrix Proprietary Database