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[176742_at]

Description F56D6.1 /REP_DB=WormBase Gene ID /WP=CE17906 /GB=AAC17546.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 67.5
(3)
A 		56
(1.8)
A 		31.5
(-0.9)
A 		11.4
(-3)
A 		56
B 84
(3)
P 		3
(-3)
A 		27.4
(-1.2)
A 		5.4
(-2.8)
A 		81
C 46.4
(2.6)
A 		48.6
(3)
A 		16.9
(-3)
A 		18.9
(-2.6)
A 		32
avr 66
(3) 		35.9
(-0.3) 		25.3
(-1.5) 		11.9
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 52.4
(-1.8)
A 		44.6
(-2.3)
A 		49.4
(-2)
A 		81.2
(0.3)
P 		35.1
(-3)
A 		119.9
(3)
P 		85
B 28.7
(-0.9)
A 		11.6
(-3)
A 		34.8
(-0.1)
A 		18.6
(-2.1)
A 		16.7
(-2.4)
A 		59.7
(3)
A 		48
C 34.4
(-1.1)
A 		4.7
(-2.9)
A 		55
(0.2)
A 		46.2
(-0.4)
A 		2.9
(-3)
A 		101.3
(3)
P 		98
avr 38.5
(-1.4) 		20.3
(-2.8) 		46.4
(-0.8) 		48.7
(-0.6) 		18.2
(-3) 		93.6
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 24.6
(3)
A 		12.1
(-0.3)
A 		8.2
(-1.3)
A 		1.7
(-3)
A 		23
B 26.8
(3)
P 		0.8
(-3)
A 		6.3
(-1.7)
A 		1.2
(-2.9)
A 		26
C 15.4
(3)
A 		14
(2.3)
A 		5.9
(-1.7)
A 		3.2
(-3)
A 		12
avr 22.3
(3) 		9
(-0.9) 		6.8
(-1.6) 		2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 9.7
(-3)
A 		15.9
(-1.1)
A 		10.8
(-2.7)
A 		20.6
(0.4)
P 		10.6
(-2.7)
A 		29.2
(3)
P 		20
B 10
(-1)
A 		3.9
(-3)
A 		8.4
(-1.5)
A 		4.9
(-2.7)
A 		6.8
(-2)
A 		22.2
(3)
A 		18
C 12.8
(-0.8)
A 		1.4
(-2.9)
A 		14
(-0.6)
A 		9.3
(-1.5)
A 		1
(-3)
A 		33.9
(3)
P 		33
avr 10.8
(-1.7) 		7.1
(-2.7) 		11.1
(-1.7) 		11.6
(-1.5) 		6.1
(-3) 		28.4
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11055
Sequence Type Exemplar sequence
Representative Public ID F56D6.1 NCBI
Target Description F56D6.1 /REP_DB=WormBase Gene ID /WP=CE17906 /GB=AAC17546.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068037 NCBI Caenorhabditis elegans F56D6.1 (F56D6.1) mRNA, complete cds. 11/11 A 
F56D6.1 ENSEMBL cdna:known chromosome:CEL140:IV:3926424:3931568:1 gene:F56D6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030665 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030680 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3926429-3931407(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D6.1
Entrez Gene 186388 Entrez gene
WormBase CE32680 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500438 F56D6.1 [Caenorhabditis elegans] 0.0
blast ABA54415 Hypothetical protein F56D6.1 [Caenorhabditis elegans] 0.0
blast ABA54416 Hypothetical protein F56D6.15 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176742_AT
tcttattcgatacacgtctgccacaaagcataatgtatttcaatgattacaaccaagcct
actcatacttgtccactaatctaccagattctacattgggatacggagatagtacgaaag
gaagtaatgtgttagatgttattaataccttctacagcagccccgcttgtggatcagttg
tcatagttttatcgaaacgttatcctaacaccacggatatctcaaacacagtggctaaag
ttcgtcaataccatggaatagtcaacttccttgcttcaaatactccatcaggtggcacac
agtctcgagtgctctttgatcttgcctccaaaacgaatggaatttactcgatcgacgatg
actcaactttctcctatttcattgcatggatgccgctacgcgagagatatccgatttatg
ccgtcaatgcgaaagtatcgggacgcgggtctcagacactttcttcaatgtccgtaccac
aacctgctcattatttaatggtggtgacagttcagagccatgtgccagttagcaatgttc
aatcagtcactcttggatggcacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTATTCGATACACGTCTGCCACA 672 615 1769 Antisense
TATTAATACCTTCTACAGCAGCCCC 343 663 1908 Antisense
TTCTCCTATTTCATTGCATGGATGC 615 693 2137 Antisense
TTGCATGGATGCCGCTACGCGAGAG 515 703 2150 Antisense
TGCCGCTACGCGAGAGATATCCGAT 519 585 2159 Antisense
GAAAGTATCGGGACGCGGGTCTCAG 152 359 2199 Antisense
GGTCTCAGACACTTTCTTCAATGTC 423 503 2216 Antisense
GTACCACAACCTGCTCATTATTTAA 670 457 2242 Antisense
ATGGTGGTGACAGTTCAGAGCCATG 155 51 2266 Antisense
TAGCAATGTTCAATCAGTCACTCTT 80 653 2298 Antisense
ATCAGTCACTCTTGGATGGCACAAC 456 29 2310 Antisense
Sequence Source Affymetrix Proprietary Database