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[176741_s_at] serine/threonine kinase /// ---

Description K09C6.2 /REP_DB=WormBase Gene ID /WP=CE11990 /GB=AAB70669.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 08      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 1.5
(-3)
A 		4.9
(-2.7)
A 		5
(-2.7)
A 		70.8
(3)
A 		69
B 4.4
(-2.1)
A 		8.4
(-0.9)
A 		21.3
(3)
A 		1.6
(-3)
A 		20
C 4.4
(-2.8)
A 		3.6
(-3)
A 		3.4
(-3)
A 		42.9
(3)
A 		40
avr 3.4
(-3) 		5.6
(-2.6) 		9.9
(-1.9) 		38.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 24.3
(-0.3)
A 		4.6
(-2.8)
A 		19.2
(-0.9)
A 		2.9
(-3)
A 		23.9
(-0.3)
A 		50
(3)
A 		47
B 10.6
(0.5)
A 		2.3
(-2.9)
A 		4.2
(-2.1)
A 		2
(-3)
A 		13.7
(1.7)
A 		16.8
(3)
A 		15
C 13.8
(1.8)
A 		3.7
(-3)
A 		3.9
(-2.9)
A 		4.3
(-2.7)
A 		5.4
(-2.2)
A 		16.4
(3)
A 		13
avr 16.2
(0.2) 		3.5
(-2.9) 		9.1
(-1.5) 		3.1
(-3) 		14.3
(-0.3) 		27.7
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.6
(-3)
A 		1.1
(-2.7)
A 		1.3
(-2.6)
A 		10.4
(3)
A 		10
B 1.4
(-1.7)
A 		2.1
(-0.7)
A 		4.9
(3)
A 		0.4
(-3)
A 		5
C 1.5
(-2.5)
A 		1
(-3)
A 		1.2
(-2.8)
A 		7.2
(3)
A 		6
avr 1.2
(-3) 		1.4
(-2.8) 		2.5
(-1.4) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.5
(-1)
A 		1.6
(-2.5)
A 		4.2
(-1.2)
A 		0.7
(-3)
A 		7.2
(0.4)
A 		12.2
(3)
A 		12
B 3.7
(0.3)
A 		0.8
(-2.7)
A 		1
(-2.5)
A 		0.5
(-3)
A 		5.6
(2.3)
A 		6.3
(3)
A 		6
C 5.1
(2.5)
A 		1.1
(-2.7)
A 		1
(-2.9)
A 		0.9
(-3)
A 		1.7
(-2)
A 		5.5
(3)
A 		5
avr 4.4
(0) 		1.2
(-2.6) 		2.1
(-1.8) 		0.7
(-3) 		4.8
(0.4) 		8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176741_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15108
Sequence Type Exemplar sequence
Representative Public ID K09C6.2 NCBI
Target Description K09C6.2 /REP_DB=WormBase Gene ID /WP=CE11990 /GB=AAB70669.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065499(11), NM_070943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065499 NCBI Caenorhabditis elegans C28A5.6 (C28A5.6) mRNA, complete cds. 11/11 A 
NM_070943 NCBI Caenorhabditis elegans K09C6.2 (K09C6.2) mRNA, complete cds. 11/11 None
SNAP00000011687 ENSEMBL cdna:SNAP chromosome:CEL140:III:4425246:4429468:-1 11/11 None
GENEFINDER00000011694 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4425246:4429468:-1 11/11 None
SNAP00000012275 ENSEMBL cdna:SNAP chromosome:CEL140:V:857253:858283:1 11/11 None
GENEFINDER00000012282 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:856679:858283:1 11/11 None
C28A5.6 ENSEMBL cdna:known chromosome:CEL140:III:4423748:4429468:-1 gene:C28A5.6 11/11 A 
K09C6.2 ENSEMBL cdna:known chromosome:CEL140:V:856679:858283:1 gene:K09C6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:856678-858283(+) 100.0 100.0
chrIII:4427811-4429468(-) 95.56 95.56
Public Domain and Genome References
Gene Title serine/threonine kinase

Ensembl C28A5.6
K09C6.2
Entrez Gene 175579 Entrez gene
187199 Entrez gene
SwissProt Q18274 EMBL-EBI
O16946 EMBL-EBI
WormBase CE00673 Wormbase
CE11990 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83631 Hypothetical protein C28A5.6 [Caenorhabditis elegans] emb|CAA83602.1| Hypothetical protein C28A5.6 [Caenorhabditis elegans] ref|NP_497900.1| C28A5.6 [Caenorhabditis elegans] 0.0
blast AAB70668 Hypothetical protein K09C6.1 [Caenorhabditis elegans] ref|NP_503345.2| K09C6.1 [Caenorhabditis elegans] 0.0
blast AAB70668 Hypothetical protein K09C6.1 [Caenorhabditis elegans] ref|NP_503345.2| K09C6.1 [Caenorhabditis elegans] 1.0E-151
blast CAE71202 Hypothetical protein CBG18064 [Caenorhabditis briggsae] 1.0E-145
blast CAA83631 Hypothetical protein C28A5.6 [Caenorhabditis elegans] emb|CAA83602.1| Hypothetical protein C28A5.6 [Caenorhabditis elegans] ref|NP_497900.1| C28A5.6 [Caenorhabditis elegans] 1.0E-144
blast CAE71202 Hypothetical protein CBG18064 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:176741_S_AT
cgtcttcccatcttatttccgaagaggatgccgagatcggagagaaaaaggagccatcat
ctgcaccaactactgaagagacagggacggagaatgaagaggaagatgataaagagaaga
ctgataaagagaaattagacgcagaggaagagaaagaattggctgaaaaacgtcttgaaa
gagagcaaaaactctataaagatttgaaatcttcgtctgatgacacgtcatcatctattg
atgataaaatgaattttgacgatgagattgaatatttggaagagatgttggataaaatag
acaaacagaaagacagaaaaggaccgaaagatgaaactgaagacactgatgctacgggag
atgaagaggatagcatgtttgaagaagtcaagacggcgtccaacaagtcgggagccgaaa
aatcgtcagccgagcaaacaagcactgcaggtgcggagacatctttgagtcaatcatact
cttcaacaactgatacatcatctgcaatgcttgattctgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTTCCCATCTTATTTCCGAAGA 282 245 473 Antisense
ATCATCTGCACCAACTACTGAAGAG 24 29 528 Antisense
GAAATCTTCGTCTGATGACACGTCA 708 361 678 Antisense
GAAACTGAAGACACTGATGCTACGG 479 357 805 Antisense
GACACTGATGCTACGGGAGATGAAG 448 367 814 Antisense
CGGCGTCCAACAAGTCGGGAGCCGA 541 239 866 Antisense
GTCGGGAGCCGAAAAATCGTCAGCC 123 473 879 Antisense
AAATCGTCAGCCGAGCAAACAAGCA 417 117 892 Antisense
GTCAATCATACTCTTCAACAACTGA 377 463 941 Antisense
AACTGATACATCATCTGCAATGCTT 318 143 960 Antisense
ATCTGCAATGCTTGATTCTGAATCA 491 33 972 Antisense
Sequence Source Affymetrix Proprietary Database