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[176739_at]

Description D2062.1 /REP_DB=WormBase Gene ID /WP=CE09088 /GB=AAK72083.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.7
(-0.8)
A 		2.9
(-3)
A 		5.1
(3)
A 		3.4
(-1.6)
A 		2
B 3.1
(-1.1)
A 		4.6
(3)
A 		2.4
(-3)
A 		3.4
(-0.3)
A 		2
C 4.8
(-2.1)
A 		8.2
(-0.4)
A 		2.9
(-3)
A 		15.3
(3)
A 		12
avr 3.9
(-2.4) 		5.2
(-0.4) 		3.5
(-3) 		7.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 6.3
(-2.7)
A 		2.8
(-3)
A 		2.9
(-3)
A 		5.6
(-2.7)
A 		27.1
(-0.6)
A 		64.3
(3)
A 		62
B 2.8
(-3)
A 		5.2
(-2.8)
A 		13.3
(-2.2)
A 		2.8
(-3)
A 		14.4
(-2.1)
A 		79.9
(3)
M 		77
C 3.4
(-2.9)
A 		3.6
(-2.9)
A 		2.8
(-3)
A 		4.1
(-2.9)
A 		33.3
(-0.1)
A 		66.5
(3)
A 		64
avr 4.2
(-3) 		3.9
(-3) 		6.3
(-2.8) 		4.2
(-3) 		24.9
(-1.1) 		70.2
(3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(3)
A 		0.6
(-2.3)
A 		1.3
(3)
A 		0.5
(-3)
A 		1
B 1
(1.8)
A 		1.1
(3)
A 		0.6
(-3)
A 		0.7
(-1.8)
A 		1
C 1.6
(-0.8)
A 		2.4
(2.3)
A 		1
(-3)
A 		2.6
(3)
A 		2
avr 1.3
(1.5) 		1.4
(3) 		1
(-3) 		1.3
(1.5) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		1
(-2.8)
A 		0.6
(-3)
A 		1.4
(-2.7)
A 		8.2
(0)
A 		15.6
(3)
A 		15
B 1
(-3)
A 		1.7
(-2.8)
A 		3.2
(-2.5)
A 		0.8
(-3)
A 		5.8
(-2)
A 		29.8
(3)
M 		29
C 1.3
(-2.8)
A 		1.1
(-2.9)
A 		0.7
(-3)
A 		0.8
(-3)
A 		10.8
(-0.2)
A 		22.3
(3)
A 		22
avr 1.2
(-2.9) 		1.3
(-2.9) 		1.5
(-2.9) 		1
(-3) 		8.3
(-1) 		22.6
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5322
Sequence Type Exemplar sequence
Representative Public ID D2062.1 NCBI
Target Description D2062.1 /REP_DB=WormBase Gene ID /WP=CE09088 /GB=AAK72083.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061911 NCBI Caenorhabditis elegans D2062.1 (D2062.1) mRNA, complete cds. 11/11 None
SNAP00000023602 ENSEMBL cdna:SNAP chromosome:CEL140:II:2631474:2633021:1 11/11 None
GENEFINDER00000023635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2631474:2633021:1 11/11 None
D2062.1 ENSEMBL cdna:known chromosome:CEL140:II:2631474:2633055:1 gene:D2062.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2631472-2633020(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2062.1
Entrez Gene 173608 Entrez gene
SwissProt Q95X90 EMBL-EBI
WormBase CE09088 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494312 D2062.1 [Caenorhabditis elegans] gb|AAK72083.1| Hypothetical protein D2062.1 [Caenorhabditis elegans] 1.0E-118
blast CAB01715 Hypothetical protein C07A4.2 [Caenorhabditis elegans] ref|NP_509706.2| C07A4.2 [Caenorhabditis elegans] 3.0E-50
blast CAE70534 Hypothetical protein CBG17169 [Caenorhabditis briggsae] 4.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.4E-16
Sequence
Target Sequence 
>C. ELEGANS:176739_AT
ggctttggatccagcttttcaacagctgacagcctttgcttccgtccataacttcatatt
ggtcaaggggcaggctgacaagcaggaccttgctgggtataatataccgaaactcaaaga
gctcatcgtggcgtatcacaatctgtaccgttcgaagcatggtgcacctccgctggttgc
tgacccggttatggatgtggcggccaagcgttgggcagatgagatggcgaagagtgggtg
gatttcccacgagaagcctagaaaatacggcgaaaacgtggccatgttttgtcagtctgg
atgctggccgttgccccaaacactcgctcaagctatggttcatttattctacatcgaagg
aatcggttatgactattcgagcttcaaacccgaactgttgaaggaaaacgggcatttcac
ccaaatcgtctggaagagctctcgaaagatcggagtcggcatctccatcggaaaatcgtc
ccagccgccatatattccgacaatgtttcattgtgtcaagttcgacccgcctggaaacgt
cctagctcagcagtact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTTGGATCCAGCTTTTCAACAG 494 537 39 Antisense
CAACAGCTGACAGCCTTTGCTTCCG 210 189 58 Antisense
TGGCGTATCACAATCTGTACCGTTC 149 543 167 Antisense
GTACCGTTCGAAGCATGGTGCACCT 131 423 183 Antisense
TGCTGACCCGGTTATGGATGTGGCG 649 581 216 Antisense
AACGTGGCCATGTTTTGTCAGTCTG 534 143 313 Antisense
AACACTCGCTCAAGCTATGGTTCAT 701 135 357 Antisense
TCCATCGGAAAATCGTCCCAGCCGC 700 589 502 Antisense
CAGCCGCCATATATTCCGACAATGT 570 201 520 Antisense
TTCATTGTGTCAAGTTCGACCCGCC 615 687 545 Antisense
GGAAACGTCCTAGCTCAGCAGTACT 669 527 571 Antisense
Sequence Source Affymetrix Proprietary Database