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[176737_at]

Description ZC416.1 /REP_DB=WormBase Gene ID /WP=CE19641 /GB=AAK68607.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 21.4
(3)
A 		15.4
(-1.2)
A 		12.8
(-3)
A 		20.5
(2.4)
A 		9
B 36.4
(-0.7)
A 		16
(-2.4)
A 		9.2
(-3)
A 		81
(3)
A 		72
C 77.1
(3)
A 		24.2
(-2)
A 		13.5
(-3)
A 		56.1
(1)
A 		64
avr 45
(1.9) 		18.5
(-2) 		11.8
(-3) 		52.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 15.9
(3)
A 		8.1
(-3)
A 		11.1
(-0.7)
A 		8.8
(-2.5)
A 		14.9
(2.2)
A 		9.2
(-2.2)
A 		8
B 19.1
(3)
A 		13.8
(0.6)
A 		13.7
(0.6)
A 		12.7
(0.1)
A 		9.5
(-1.3)
A 		5.8
(-3)
A 		13
C 49
(3)
A 		7.8
(-2.9)
A 		9.4
(-2.7)
A 		7.3
(-3)
A 		10.9
(-2.5)
A 		14.9
(-1.9)
A 		42
avr 28
(3) 		9.9
(-2.9) 		11.4
(-2.4) 		9.6
(-3) 		11.8
(-2.3) 		10
(-2.9) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.8
(3)
A 		3.3
(-2.6)
A 		3.3
(-2.6)
A 		3
(-3)
A 		5
B 11.6
(0.8)
A 		4
(-2.3)
A 		2.1
(-3)
A 		17.3
(3)
A 		15
C 25.5
(3)
A 		7
(-2.3)
A 		4.7
(-3)
A 		9.5
(-1.6)
A 		21
avr 15
(3) 		4.8
(-2.3) 		3.4
(-3) 		9.9
(0.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.9
(-1.2)
A 		2.9
(-1.2)
A 		2.4
(-2.5)
A 		2.2
(-3)
A 		4.5
(3)
A 		2.2
(-3)
A 		2
B 6.6
(3)
A 		4.6
(0.3)
A 		3.3
(-1.5)
A 		3.4
(-1.4)
A 		3.8
(-0.8)
A 		2.2
(-3)
A 		4
C 18.2
(3)
A 		2.4
(-2.7)
A 		2.4
(-2.7)
A 		1.5
(-3)
A 		3.5
(-2.3)
A 		5
(-1.7)
A 		17
avr 9.2
(3) 		3.3
(-2.2) 		2.7
(-2.7) 		2.4
(-3) 		3.9
(-1.7) 		3.1
(-2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10550
Sequence Type Exemplar sequence
Representative Public ID ZC416.1 NCBI
Target Description ZC416.1 /REP_DB=WormBase Gene ID /WP=CE19641 /GB=AAK68607.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067988 NCBI Caenorhabditis elegans ZC416.1 (ZC416.1) mRNA, complete cds. 11/11 None
SNAP00000026352 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3637075:3637585:1 11/11 None
GENEFINDER00000026357 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3637075:3637585:1 11/11 None
ZC416.1 ENSEMBL cdna:known chromosome:CEL140:IV:3637075:3637589:1 gene:ZC416.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3637080-3637595(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC416.1
Entrez Gene 191167 Entrez gene
WormBase CE19641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500389 ZC416.1 [Caenorhabditis elegans] gb|AAK68607.1| Hypothetical protein ZC416.1 [Caenorhabditis elegans] 8.0E-67
blast NP_500389 ZC416.1 [Caenorhabditis elegans] gb|AAK68607.1| Hypothetical protein ZC416.1 [Caenorhabditis elegans] 3.0E-66
blast CAE63772 Hypothetical protein CBG08310 [Caenorhabditis briggsae] 2.0E-58
blast CAE63772 Hypothetical protein CBG08310 [Caenorhabditis briggsae] 7.0E-58
Sequence
Target Sequence 
>C. ELEGANS:176737_AT
attaaaccgaccatctcaacggcgcccgatgactgcatggagtcggatccgattaaggag
atcaacttcctcctggcgagcagcaagaacatgaagatcgaggagacgcccgtcttcaac
atccgcctaattgccgaagtgaaagcgcgaccctttctgtacgatcagtccgacgagggt
tataaccttctctcatggcggaactcggcatggaacgaaattgcagagaacctggagacc
acatccgaacacgtgaaaacgagatggaagacgctgcgagatcggtacaagaaggaggag
aagaaggagcgggtgtcaaagaaggcgtcaagttgggtgttccagaggcctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAAACCGACCATCTCAACGGCGC 186 3 43 Antisense
GCGCCCGATGACTGCATGGAGTCGG 579 287 64 Antisense
TTCCTCCTGGCGAGCAGCAAGAACA 599 699 109 Antisense
AAGATCGAGGAGACGCCCGTCTTCA 656 155 136 Antisense
CAACATCCGCCTAATTGCCGAAGTG 381 189 159 Antisense
AGTGAAAGCGCGACCCTTTCTGTAC 18 61 180 Antisense
CTTTCTGTACGATCAGTCCGACGAG 524 223 195 Antisense
GAGGGTTATAACCTTCTCTCATGGC 570 401 217 Antisense
CTCTCATGGCGGAACTCGGCATGGA 181 219 232 Antisense
AGAGAACCTGGAGACCACATCCGAA 357 69 267 Antisense
CAAGTTGGGTGTTCCAGAGGCCTCT 98 185 371 Antisense
Sequence Source Affymetrix Proprietary Database