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[176736_at]

Description C55B7.5 /REP_DB=WormBase Gene ID /WP=CE09016 /GB=AAK68276.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 68      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 135.4
(0.8)
P 		145.1
(2.2)
M 		109.3
(-3)
P 		150.8
(3)
A 		42
B 176.2
(2.7)
P 		122.5
(-3)
P 		179.3
(3)
P 		160.2
(1)
P 		57
C 174.9
(1.7)
P 		134.6
(-3)
P 		186.1
(3)
P 		162.2
(0.2)
M 		52
avr 162.2
(3) 		134.1
(-3) 		158.2
(2.1) 		157.7
(2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 219.2
(-2.2)
P 		210.7
(-2.4)
P 		199
(-2.7)
P 		187.7
(-3)
P 		193.5
(-2.9)
P 		434.6
(3)
P 		247
B 182.7
(-2.2)
P 		148.8
(-3)
P 		154.4
(-2.9)
P 		176.9
(-2.3)
P 		226.6
(-1.1)
P 		396.1
(3)
P 		247
C 185.2
(-1.7)
P 		162.6
(-2.1)
P 		214.4
(-1.1)
P 		115.4
(-3)
P 		220.7
(-1)
P 		428.3
(3)
P 		313
avr 195.7
(-2.2) 		174
(-2.7) 		189.3
(-2.3) 		160
(-3) 		213.6
(-1.8) 		419.7
(3) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 49.3
(3)
P 		31.5
(-0.9)
M 		28.6
(-1.6)
P 		22.1
(-3)
A 		27
B 56.2
(3)
P 		30.3
(-3)
P 		41.5
(-0.4)
P 		34.1
(-2.1)
P 		26
C 57.9
(1.9)
P 		38.7
(-1.2)
P 		64.9
(3)
P 		27.3
(-3)
M 		38
avr 54.5
(3) 		33.5
(-1.7) 		45
(0.9) 		27.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 40.4
(-3)
P 		75
(0.2)
P 		43.3
(-2.7)
P 		47.6
(-2.3)
P 		58.4
(-1.3)
P 		105.8
(3)
P 		65
B 63.6
(-1.6)
P 		49.5
(-2.3)
P 		37.5
(-3)
P 		46.9
(-2.5)
P 		92.1
(-0)
P 		147.7
(3)
P 		110
C 68.7
(-0.7)
P 		49.6
(-1.7)
P 		54.6
(-1.4)
P 		23.2
(-3)
P 		71.4
(-0.6)
P 		143.4
(3)
P 		120
avr 57.6
(-1.8) 		58
(-1.8) 		45.1
(-2.6) 		39.2
(-3) 		74
(-0.8) 		132.3
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1826
Sequence Type Exemplar sequence
Representative Public ID C55B7.5 NCBI
Target Description C55B7.5 /REP_DB=WormBase Gene ID /WP=CE09016 /GB=AAK68276.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059469 NCBI Caenorhabditis elegans C55B7.5 (C55B7.5) mRNA, complete cds. 11/11 None
SNAP00000038300 ENSEMBL cdna:SNAP chromosome:CEL140:I:6502428:6504029:1 11/11 None
GENEFINDER00000038316 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6502428:6504029:1 11/11 None
C55B7.5 ENSEMBL cdna:known chromosome:CEL140:I:6502425:6504202:1 gene:C55B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6502392-6503958(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55B7.5
Entrez Gene 183841 Entrez gene
SwissProt Q966M4 EMBL-EBI
WormBase CE09016 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16272 prefoldin complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491870 C55B7.5 [Caenorhabditis elegans] gb|AAK68276.1| Hypothetical protein C55B7.5 [Caenorhabditis elegans] 0.0
blast CAE60461 Hypothetical protein CBG04072 [Caenorhabditis briggsae] 1.0E-150
blast CAE60461 Hypothetical protein CBG04072 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 1.9E-29
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 1.9E-29
Sequence
Target Sequence 
>C. ELEGANS:176736_AT
aacgtttgctggcacaacctggagtaacacagaaggaaatggaacggctgttagatttct
tagacacttgtgatgaagagagttccgatgaggagtatgatgaagatgaagaggaaggag
acgatgatgaagagaatcttaacaatagtgtagaagaactcgactctgatgattatgcat
ctgatgataatatcgagaaaagcaataattctgaccaacaactgaaatccaaaaagatag
agacccaagtgattaaggtcgaagaaattgttgaggaaaccgtaacaaaaaccaccgtca
aacggaaaaaatcgggagttcgatttgcgcaacagcttgaaaatgtgaaaacattccatc
aaacagacactgtcgaaatcaaggaagaagattcagttattgaaaccaaatcaattctcc
ggagcactgaaccaacacccgttgatcgttcagctctcgaacccgagcaaaaggaacttg
ctgcgatgagcacaatgacatttccaggagaaattgttgagaagaatccgtacgagtgtg
agccgtcgacaagcagagaccccgctcccgtcatcaccgagaaaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTTTGCTGGCACAACCTGGAGT 187 143 731 Antisense
ACGGCTGTTAGATTTCTTAGACACT 270 97 774 Antisense
TCGGGAGTTCGATTTGCGCAACAGC 687 605 1042 Antisense
ACATTCCATCAAACAGACACTGTCG 287 105 1081 Antisense
AACCAAATCAATTCTCCGGAGCACT 79 149 1134 Antisense
GAACCAACACCCGTTGATCGTTCAG 547 345 1159 Antisense
TTCAGCTCTCGAACCCGAGCAAAAG 247 687 1179 Antisense
GGAACTTGCTGCGATGAGCACAATG 624 523 1203 Antisense
GAATCCGTACGAGTGTGAGCCGTCG 433 329 1254 Antisense
GTGAGCCGTCGACAAGCAGAGACCC 499 483 1268 Antisense
GCTCCCGTCATCACCGAGAAAAAAG 649 297 1294 Antisense
Sequence Source Affymetrix Proprietary Database