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[176735_at]

Description Y111B2A.9 /REP_DB=WormBase Gene ID /WP=CE26637 /GB=CAC35837.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 31      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 199.5
(3)
A 		16.7
(-3)
A 		21.7
(-2.8)
A 		95.9
(-0.4)
A 		183
B 115.2
(3)
A 		25.3
(-2.8)
A 		22.5
(-3)
A 		46.6
(-1.4)
A 		93
C 147.9
(3)
A 		9
(-3)
A 		14.7
(-2.8)
A 		83.3
(0.2)
A 		139
avr 154.2
(3) 		17
(-3) 		19.6
(-2.9) 		75.3
(-0.5) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 6.7
(-2.8)
A 		10.8
(-2.1)
A 		6.2
(-2.9)
A 		13.7
(-1.6)
A 		5.4
(-3)
A 		41.4
(3)
A 		36
B 19.8
(-1.8)
A 		4.5
(-3)
A 		11.2
(-2.5)
A 		27.1
(-1.2)
A 		19.5
(-1.8)
A 		80.8
(3)
A 		76
C 6
(-2.9)
A 		8.8
(-2.6)
A 		13.9
(-2.1)
A 		4.8
(-3)
A 		4.9
(-3)
A 		65.3
(3)
A 		61
avr 10.8
(-2.7) 		8
(-3) 		10.4
(-2.7) 		15.2
(-2.2) 		9.9
(-2.8) 		62.5
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 72.6
(3)
A 		3.6
(-3)
A 		5.7
(-2.8)
A 		14
(-2.1)
A 		69
B 36.7
(3)
A 		6.3
(-2.8)
A 		5.2
(-3)
A 		9.9
(-2.1)
A 		32
C 49
(3)
A 		2.6
(-3)
A 		5.1
(-2.7)
A 		14.1
(-1.5)
A 		46
avr 52.8
(3) 		4.2
(-3) 		5.3
(-2.9) 		12.7
(-2) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.2
(-3)
A 		3.8
(-1.2)
A 		1.3
(-2.9)
A 		3.5
(-1.4)
A 		1.6
(-2.7)
A 		10.1
(3)
A 		9
B 6.9
(-1.9)
A 		1.5
(-3)
A 		2.7
(-2.7)
A 		7.2
(-1.8)
A 		7.9
(-1.7)
A 		30.1
(3)
A 		29
C 2.2
(-2.7)
A 		2.7
(-2.5)
A 		3.5
(-2.3)
A 		1
(-3)
A 		1.6
(-2.8)
A 		21.8
(3)
A 		21
avr 3.4
(-2.7) 		2.7
(-2.9) 		2.5
(-3) 		3.9
(-2.5) 		3.7
(-2.6) 		20.7
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6333
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.9 NCBI
Target Description Y111B2A.9 /REP_DB=WormBase Gene ID /WP=CE26637 /GB=CAC35837.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027652(10), NM_001027651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027652 NCBI Caenorhabditis elegans Y111B2A.9b (Y111B2A.9) mRNA, complete cds. 10/11 None
NM_001027651 NCBI Caenorhabditis elegans Y111B2A.9a (Y111B2A.9) mRNA, complete cds. 11/11 None
GENEFINDER00000006264 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12559573:12562953:-1 10/11 None
Y111B2A.9b ENSEMBL cdna:known chromosome:CEL140:III:12559577:12562953:-1 gene:Y111B2A.9 10/11 None
Y111B2A.9a ENSEMBL cdna:known chromosome:CEL140:III:12559838:12575241:-1 gene:Y111B2A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006154 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12559568-12575237(-) 93.16 100.0
Public Domain and Genome References
Ensembl Y111B2A.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35837 Hypothetical protein Y111B2A.9a [Caenorhabditis elegans] ref|NP_001022822.1| Y111B2A.9a [Caenorhabditis elegans] 0.0
blast CAD91706 Hypothetical protein Y111B2A.9b [Caenorhabditis elegans] ref|NP_001022823.1| Y111B2A.9b [Caenorhabditis elegans] 1.0E-137
blast CAE72831 Hypothetical protein CBG20115 [Caenorhabditis briggsae] 1.0E-137
blast CAD91706 Hypothetical protein Y111B2A.9b [Caenorhabditis elegans] ref|NP_001022823.1| Y111B2A.9b [Caenorhabditis elegans] 1.0E-127
blast CAC35837 Hypothetical protein Y111B2A.9a [Caenorhabditis elegans] ref|NP_001022822.1| Y111B2A.9a [Caenorhabditis elegans] 1.0E-72
blast CAD91706 Hypothetical protein Y111B2A.9b [Caenorhabditis elegans] ref|NP_001022823.1| Y111B2A.9b [Caenorhabditis elegans] 5.0E-72
Sequence
Target Sequence 
>C. ELEGANS:176735_AT
aagaccgcctgatttgaacggctcaaacaattcgggctcatcgtcatcgtcaagcggcgg
agcaaattcgggtgtacaacagagctctgttcatccatccaactcatattcaccacgttc
tcgtccactattcgttgatactcaaatggccaatcatttacaggattcaaatatgaaacg
aagaagtccagtgtcacaggtggtggattttgtacgtggaaggaatcgcacgtattcgct
tcaactctcgtcgagcccaatgtgctcaccacaatcagttgccgcgcgtgcaagtgcctc
gtgtgacggatgcaatggacctcctcctcctcctcaaccaatcggaatgagcccatcggg
acgtcgtcaaacgatcagtggccgagtacatcgggcatcgttcaccgctggtggaacgtt
gaaaagtttcgattcgggattggatctctcgtcgccgacgatcaatcatacggcactgct
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCGCCTGATTTGAACGGCTCA 339 153 708 Antisense
AAACAATTCGGGCTCATCGTCATCG 322 129 732 Antisense
GCGGCGGAGCAAATTCGGGTGTACA 245 293 761 Antisense
TTCTCGTCCACTATTCGTTGATACT 473 691 825 Antisense
AGGAATCGCACGTATTCGCTTCAAC 422 53 928 Antisense
TCAACTCTCGTCGAGCCCAATGTGC 348 631 948 Antisense
GCAAGTGCCTCGTGTGACGGATGCA 590 321 997 Antisense
GCCCATCGGGACGTCGTCAAACGAT 708 275 1058 Antisense
CGAGTACATCGGGCATCGTTCACCG 55 251 1090 Antisense
CGATTCGGGATTGGATCTCTCGTCG 668 247 1137 Antisense
ACGATCAATCATACGGCACTGCTAA 254 93 1165 Antisense
Sequence Source Affymetrix Proprietary Database