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[176732_at]

Description Y111B2A.4 /REP_DB=WormBase Gene ID /WP=CE26623 /GB=CAC35834.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 38
(-2.2)
A 		59.1
(-0.4)
A 		29.3
(-3)
A 		97.8
(3)
P 		69
B 74.4
(3)
A 		58.2
(1.1)
A 		23
(-3)
A 		29.3
(-2.3)
A 		51
C 51.9
(-0.9)
A 		51.1
(-1)
A 		25.1
(-3)
A 		102.7
(3)
A 		78
avr 54.8
(0.4) 		56.1
(0.6) 		25.8
(-3) 		76.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 59
(3)
A 		24.4
(-0.7)
A 		54.6
(2.5)
A 		44.4
(1.5)
A 		2.4
(-3)
A 		9
(-2.3)
A 		57
B 7.8
(-3)
A 		19.9
(-1.7)
A 		63.8
(3)
A 		40.4
(0.5)
A 		22
(-1.5)
A 		34.2
(-0.2)
A 		56
C 40.3
(3)
A 		27
(-1.6)
A 		37.8
(2.1)
A 		35.2
(1.3)
A 		22.8
(-3)
A 		33.5
(0.7)
P 		18
avr 35.7
(0.3) 		23.8
(-1.7) 		52.1
(3) 		40
(1) 		15.7
(-3) 		25.6
(-1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.8
(2.5)
A 		12.8
(1.6)
A 		7.7
(-3)
A 		14.3
(3)
P 		7
B 23.7
(3)
A 		14.4
(-0)
A 		5.3
(-3)
A 		6.2
(-2.7)
A 		18
C 17.2
(2.9)
A 		14.7
(1.2)
A 		8.7
(-3)
A 		17.3
(3)
A 		9
avr 18.2
(3) 		14
(0.7) 		7.2
(-3) 		12.6
(-0.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.9
(2.5)
A 		8.7
(1.3)
A 		11.9
(3)
A 		11.3
(2.7)
A 		0.7
(-3)
A 		2.2
(-2.2)
A 		11
B 2.7
(-3)
A 		6.6
(-1.2)
A 		15.5
(3)
A 		10.7
(0.8)
A 		9
(-0)
A 		12.8
(1.7)
A 		13
C 14.9
(3)
A 		8.2
(-2.2)
A 		9.6
(-1.1)
A 		7.1
(-3)
A 		7.4
(-2.8)
A 		11.2
(0.2)
P 		8
avr 9.5
(0.5) 		7.8
(-1.1) 		12.3
(3) 		9.7
(0.6) 		5.7
(-3) 		8.7
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7150
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.4 NCBI
Target Description Y111B2A.4 /REP_DB=WormBase Gene ID /WP=CE26623 /GB=CAC35834.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002374, NM_001027650
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006146 ENSEMBL cdna:SNAP chromosome:CEL140:III:12496419:12515610:1 10/11 None
GENEFINDER00000006267 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12499438:12515888:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NR_002374 3/11 Cross Hyb Matching Probes None
NM_067233 4/11 Cross Hyb Matching Probes None
NM_001027650 3/11 Cross Hyb Matching Probes None
Y111B2A.4 4/11 Cross Hyb Matching Probes None
Y111B2A.5a 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12499433-12510992(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60972 Hypothetical protein Y111B2A.3 [Caenorhabditis elegans] ref|NP_499633.1| Y111B2A.3 [Caenorhabditis elegans] 0.0
blast CAA97420 Hypothetical protein B0035.6 [Caenorhabditis elegans] ref|NP_502130.1| B0035.6 [Caenorhabditis elegans] 0.0
blast CAC35834 Hypothetical protein Y111B2A.4 [Caenorhabditis elegans] ref|NP_499634.2| Y111B2A.4 [Caenorhabditis elegans] 0.0
blast CAE72832 Hypothetical protein CBG20118 [Caenorhabditis briggsae] 1.0E-159
blast CAB81956 Hypothetical protein Y111B2A.5a [Caenorhabditis elegans] ref|NP_001022821.1| Y111B2A.5a [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 1.79999995231628
Sequence
Target Sequence 
>C. ELEGANS:176732_AT
aagctgcgagaggctaatcggctgttgttgggggagaatgtcgcgttgcaggagaacttg
gcaaattacgaggacacaatgaagagcctaatctcgtccagcgagcaagatattggaaaa
ttccgtgaacaattcggcgaaattcaagaaaatcataagcaacaacgtgaggctatgatt
gctgaaaacgatgcgttgagagaggaatcggcggcgattaaacggcaaagagatattgtt
ctcgaggagtccgcactgcttaaagcttattttaaaactattttaaagtataatcctccc
attttttttccagaagtcaacgaaaaactgaaacaaaaatcggcaacagaagagtcaaaa
attgagcttctacagaaaaaggcagaccttctggaacaagttttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTGCGAGAGGCTAATCGGCTGT 216 149 1303 Antisense
GGCTAATCGGCTGTTGTTGGGGGAG 312 537 1314 Antisense
GTTGGGGGAGAATGTCGCGTTGCAG 437 435 1329 Antisense
ATGTCGCGTTGCAGGAGAACTTGGC 496 37 1340 Antisense
AATGAAGAGCCTAATCTCGTCCAGC 364 163 1380 Antisense
GCCTAATCTCGTCCAGCGAGCAAGA 184 283 1388 Antisense
ACAACGTGAGGCTATGATTGCTGAA 440 111 1464 Antisense
TGCGTTGAGAGAGGAATCGGCGGCG 168 583 1494 Antisense
ATCGGCGGCGATTAAACGGCAAAGA 392 33 1509 Antisense
AGGAGTCCGCACTGCTTAAAGCTTA 641 53 1547 Antisense
GCAGACCTTCTGGAACAAGTTTTGG 136 311 1684 Antisense
Sequence Source Affymetrix Proprietary Database