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[176730_at]

Description Y111B2A.2 /REP_DB=WormBase Gene ID /WP=CE26622 /GB=CAC35833.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_total > 97      4grp_total > 32      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 760
1 2 3 4 range
A 179.4
(-3)
P 		462
(0)
P 		744.1
(3)
P 		575.4
(1.2)
P 		565
B 206.4
(-3)
P 		605.4
(1.1)
P 		773.2
(2.8)
P 		791.5
(3)
P 		585
C 186.7
(-3)
P 		465.6
(-0.8)
P 		939.3
(3)
P 		687.1
(1)
P 		753
avr 190.8
(-3) 		511
(0.1) 		818.9
(3) 		684.7
(1.7) 		628

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2256
1 2 3 4 5 6 range
A 68.8
(-3)
A 		199.9
(-2.6)
P 		375.7
(-2.1)
P 		784.8
(-1)
P 		1297.4
(0.5)
P 		2175.2
(3)
P 		2106
B 130.4
(-3)
P 		175.7
(-2.9)
P 		377.4
(-2.2)
P 		757.1
(-1.1)
P 		1488.1
(1.2)
P 		2071.2
(3)
P 		1941
C 114.1
(-3)
P 		192.9
(-2.8)
P 		395
(-2.2)
P 		768.1
(-1.2)
P 		1575.2
(1)
P 		2324.4
(3)
P 		2210
avr 104.4
(-3) 		189.5
(-2.8) 		382.7
(-2.2) 		770
(-1.1) 		1453.6
(0.9) 		2190.3
(3) 		2086
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 65.3
(-3)
P 		100.3
(-1.4)
P 		194.5
(3)
P 		84.2
(-2.1)
P 		129
B 65.8
(-3)
P 		149.5
(1.4)
P 		179.2
(3)
P 		168.7
(2.4)
P 		113
C 61.8
(-3)
P 		133.9
(-1.4)
P 		327.4
(3)
P 		115.9
(-1.8)
P 		266
avr 64.3
(-3) 		127.9
(-0.7) 		233.7
(3) 		122.9
(-0.9) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 765
1 2 3 4 5 6 range
A 12.7
(-3)
A 		71.1
(-2.3)
P 		81.8
(-2.2)
P 		199
(-0.8)
P 		391.5
(1.4)
P 		529.6
(3)
P 		517
B 45.4
(-3)
P 		58.5
(-2.9)
P 		91.6
(-2.6)
P 		200.5
(-1.7)
P 		604.6
(1.6)
P 		772.3
(3)
P 		727
C 42.3
(-3)
P 		58.9
(-2.9)
P 		100.5
(-2.5)
P 		154.5
(-2.1)
P 		509.7
(0.8)
P 		778.1
(3)
P 		736
avr 33.5
(-3) 		62.8
(-2.7) 		91.3
(-2.5) 		184.7
(-1.6) 		501.9
(1.3) 		693.3
(3) 		660
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6948
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.2 NCBI
Target Description Y111B2A.2 /REP_DB=WormBase Gene ID /WP=CE26622 /GB=CAC35833.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067231 NCBI Caenorhabditis elegans Y111B2A.2 (Y111B2A.2) mRNA, complete cds. 11/11 None
SNAP00000006145 ENSEMBL cdna:SNAP chromosome:CEL140:III:12495963:12496268:1 11/11 None
Y111B2A.2 ENSEMBL cdna:known chromosome:CEL140:III:12495961:12497162:1 gene:Y111B2A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12495958-12496264(+) 100.0 100.0
chrIV:11320311-11320620(+) 92.72 92.72
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.2
Entrez Gene 176675 Entrez gene
SwissProt Q9BHL9 EMBL-EBI
WormBase CE26622 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35833 Hypothetical protein Y111B2A.2 [Caenorhabditis elegans] ref|NP_499632.1| Y111B2A.2 [Caenorhabditis elegans] 4.0E-39
blast CAE72833 Hypothetical protein CBG20119 [Caenorhabditis briggsae] 3.0E-37
blast CAI91178 Hypothetical protein B0035.18 [Caenorhabditis elegans] ref|NP_001021261.1| B0035.18 [Caenorhabditis elegans] 8.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499632.1 1 13-35
Y111B2A.2 1 13-35
SNAP00000006145 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:176730_AT
ccgaaacatgctccaatcatatggaaaacgcggaatttacgtttcactggctgtcgctgt
cgtctcgactgccgccttcaacgcattttacgtctggccacgtcacaacaaatatgaaga
atttttcgcaaactacgatccgtacactagaatgaaggagatttgcgctgctaacaaggg
atacatgcatacttgtccgaaggaattggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAAACATGCTCCAATCATATGGA 564 263 21 Antisense
GGAATTTACGTTTCACTGGCTGTCG 627 531 52 Antisense
CGCCTTCAACGCATTTTACGTCTGG 142 257 93 Antisense
TTTTACGTCTGGCCACGTCACAACA 137 675 106 Antisense
GTCTGGCCACGTCACAACAAATATG 143 473 112 Antisense
GAATTTTTCGCAAACTACGATCCGT 242 323 139 Antisense
ACTACGATCCGTACACTAGAATGAA 518 101 152 Antisense
GAATGAAGGAGATTTGCGCTGCTAA 418 331 170 Antisense
AGGAGATTTGCGCTGCTAACAAGGG 434 55 176 Antisense
GGGATACATGCATACTTGTCCGAAG 709 495 198 Antisense
GCATACTTGTCCGAAGGAATTGGCG 303 275 207 Antisense
Sequence Source Affymetrix Proprietary Database