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[176729_at]

Description Y111B2A.1 /REP_DB=WormBase Gene ID /WP=CE26621 /GB=CAC35832.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 34.4
(-3)
A 		62.9
(-1.7)
A 		69.6
(-1.4)
M 		168.5
(3)
M 		134
B 37.7
(-3)
A 		62.6
(-0.8)
A 		81.6
(1)
P 		104.2
(3)
M 		67
C 43.8
(-3)
A 		52.7
(-2.2)
A 		78.5
(-0)
P 		114.3
(3)
M 		71
avr 38.6
(-3) 		59.4
(-1.6) 		76.6
(-0.5) 		129
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 31.7
(-2.6)
A 		19
(-3)
A 		75.7
(-1.3)
M 		123.1
(0.1)
A 		173.4
(1.6)
P 		219.8
(3)
P 		201
B 49.8
(-3)
A 		64.5
(-2.5)
A 		78.8
(-2.1)
A 		102.2
(-1.3)
P 		156.3
(0.4)
P 		236.3
(3)
P 		187
C 10.6
(-3)
A 		43.2
(-2.1)
A 		66.5
(-1.5)
A 		112.5
(-0.3)
A 		93.5
(-0.8)
P 		233.8
(3)
P 		223
avr 30.7
(-3) 		42.2
(-2.7) 		73.7
(-1.7) 		112.6
(-0.5) 		141.1
(0.3) 		230
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.5
(-3)
A 		13.7
(-2.4)
A 		18.2
(-0.2)
M 		24.7
(3)
M 		12
B 12
(-3)
A 		15.5
(-0.9)
A 		18.9
(1.1)
P 		22.2
(3)
M 		10
C 14.5
(-3)
A 		15.2
(-2.7)
A 		27.4
(3)
P 		19.3
(-0.8)
M 		13
avr 13
(-3) 		14.8
(-1.8) 		21.5
(2.6) 		22.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 5.8
(-3)
A 		6.8
(-2.9)
A 		16.5
(-1.7)
M 		31.2
(0.2)
A 		52.3
(2.8)
P 		53.5
(3)
P 		48
B 17.3
(-3)
A 		21.5
(-2.6)
A 		19.1
(-2.8)
A 		27.1
(-2.2)
P 		63.5
(0.9)
P 		88.1
(3)
P 		71
C 3.9
(-3)
A 		13.2
(-2.3)
A 		16.9
(-2)
A 		22.6
(-1.5)
A 		30.2
(-0.9)
P 		78.3
(3)
P 		74
avr 9
(-3) 		13.8
(-2.6) 		17.5
(-2.2) 		27
(-1.3) 		48.7
(0.7) 		73.3
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6848
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.1 NCBI
Target Description Y111B2A.1 /REP_DB=WormBase Gene ID /WP=CE26621 /GB=CAC35832.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067230 NCBI Caenorhabditis elegans Y111B2A.1 (Y111B2A.1) mRNA, complete cds. 11/11 None
Y111B2A.1 ENSEMBL cdna:known chromosome:CEL140:III:12492799:12495513:-1 gene:Y111B2A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006144 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006286 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12492794-12495509(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.1
Entrez Gene 190948 Entrez gene
SwissProt Q9BHM0 EMBL-EBI
WormBase CE34107 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35832 Hypothetical protein Y111B2A.1 [Caenorhabditis elegans] ref|NP_499631.2| Y111B2A.1 [Caenorhabditis elegans] 0.0
blast AAK31409 Hypothetical protein C16A11.3 [Caenorhabditis elegans] ref|NP_494745.1| C16A11.3 [Caenorhabditis elegans] 1.0E-102
blast AAK39370 Hypothetical protein Y73B3A.16 [Caenorhabditis elegans] ref|NP_508075.2| Y73B3A.16 [Caenorhabditis elegans] 5.0E-87
Protein Families
Method ID Description E-Value
hanks 3.1.4 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk4 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-47
Sequence
Target Sequence 
>C. ELEGANS:176729_AT
ccacgtgtaccttcaccacggaaattaggaaagatgtgtgctatatttcacctagcgagg
agctcaatgtgtgtattatcgatttcggaaatgctcgaaagagcaaccaggaggatttga
aatcatcggaagttgtgcagacacaaaactacagagcaccggagatcttcatgggactcc
ctttttcgacgagatccgatgtctggtcattcggatgtattctcagtgaattgtacactg
gagaattgcttttctacggaaatgacgagcacgatacggagcagcttcagtttgagctga
tgcaattgattcttcaacaagctccgtcttatttaatgatgagaaaagcagctgaaaaca
agaaaaaaatgatttgcatcgatggcaatgtctacatgaagaagagagcaaaatcctcat
tcgacccgccactacccctttataagcaacgccgccgaaatgatcgtgccgccatcccac
tcttcgagcttctcgagcgaattctcatcttcgacccaacaaggcgtctcacatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGTGTACCTTCACCACGGAAAT 324 275 626 Antisense
TACAGAGCACCGGAGATCTTCATGG 6 645 775 Antisense
TTCATGGGACTCCCTTTTTCGACGA 514 683 793 Antisense
GACGAGATCCGATGTCTGGTCATTC 572 377 813 Antisense
GGTCATTCGGATGTATTCTCAGTGA 601 503 830 Antisense
GACGAGCACGATACGGAGCAGCTTC 214 379 889 Antisense
TTCTTCAACAAGCTCCGTCTTATTT 707 687 935 Antisense
AGCAACGCCGCCGAAATGATCGTGC 599 75 1070 Antisense
CACTCTTCGAGCTTCTCGAGCGAAT 9 199 1103 Antisense
TCGAGCGAATTCTCATCTTCGACCC 659 601 1118 Antisense
GACCCAACAAGGCGTCTCACATTTT 192 381 1138 Antisense
Sequence Source Affymetrix Proprietary Database