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[176725_at]

Description T07D1.5 /REP_DB=WormBase Gene ID /WP=CE07470 /GB=AAK71401.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 3
(-3)
A 		23.8
(3)
A 		7
(-1.8)
A 		5.6
(-2.3)
A 		21
B 9.3
(3)
A 		2.9
(-2.5)
A 		2.3
(-3)
A 		7.6
(1.5)
A 		7
C 3.2
(-2.9)
A 		2
(-3)
A 		4.7
(-2.8)
A 		69.1
(3)
A 		67
avr 5.2
(-2.9) 		9.6
(-1.7) 		4.7
(-3) 		27.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.4
(-2.6)
A 		1.7
(-3)
A 		14.1
(-0.4)
A 		4.7
(-2.4)
A 		3.6
(-2.6)
A 		29.9
(3)
A 		28
B 8
(3)
A 		3.1
(-1.3)
A 		3.3
(-1.1)
A 		2.8
(-1.6)
A 		6.4
(1.6)
A 		1.2
(-3)
A 		7
C 2.5
(-3)
A 		7
(-2.1)
A 		32.1
(3)
A 		10.5
(-1.4)
A 		3.3
(-2.8)
A 		17.4
(0)
A 		30
avr 4.6
(-2.7) 		3.9
(-3) 		16.5
(3) 		6
(-2) 		4.4
(-2.8) 		16.2
(2.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-2.6)
A 		5.2
(3)
A 		1.8
(-1.6)
A 		0.8
(-3)
A 		4
B 3
(3)
A 		0.7
(-2.5)
A 		0.5
(-3)
A 		1.6
(-0.4)
A 		3
C 1.1
(-2.7)
A 		0.6
(-3)
A 		1.6
(-2.5)
A 		11.6
(3)
A 		11
avr 1.7
(-2.3) 		2.2
(-1.4) 		1.3
(-3) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.6
(-3)
A 		3.1
(-0.8)
A 		1.2
(-2.5)
A 		1.1
(-2.6)
A 		7.3
(3)
A 		7
B 2.8
(3)
A 		1
(-1.5)
A 		0.8
(-2)
A 		0.8
(-2)
A 		2.6
(2.5)
A 		0.4
(-3)
A 		2
C 0.9
(-3)
A 		2.1
(-2)
A 		8.2
(3)
A 		2.1
(-2)
A 		1.1
(-2.8)
A 		5.8
(1)
A 		7
avr 1.4
(-2.6) 		1.2
(-3) 		4
(2.1) 		1.4
(-2.6) 		1.6
(-2.3) 		4.5
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18258
Sequence Type Exemplar sequence
Representative Public ID T07D1.5 NCBI
Target Description T07D1.5 /REP_DB=WormBase Gene ID /WP=CE07470 /GB=AAK71401.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076041 NCBI Caenorhabditis elegans T07D1.5 (T07D1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042797 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2416930:2419112:-1 11/11 None
T07D1.5 ENSEMBL cdna:known chromosome:CEL140:X:2418419:2419871:-1 gene:T07D1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042787 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2418418-2420644(-) 95.19 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D1.5
Entrez Gene 188220 Entrez gene
SwissProt Q95QB4 EMBL-EBI
WormBase CE36321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16822 hypothetical protein T07D1.1 - Caenorhabditis elegans 0.0
blast CAE58878 Hypothetical protein CBG02111 [Caenorhabditis briggsae] 1.0E-122
blast AAR85903 Hypothetical protein T07D1.5 [Caenorhabditis elegans] ref|NP_508442.2| T07D1.5 [Caenorhabditis elegans] 1.0E-115
blast T16822 hypothetical protein T07D1.1 - Caenorhabditis elegans 1.0E-82
blast AAR85903 Hypothetical protein T07D1.5 [Caenorhabditis elegans] ref|NP_508442.2| T07D1.5 [Caenorhabditis elegans] 1.0E-79
Sequence
Target Sequence 
>C. ELEGANS:176725_AT
gcctggtcgctgaacttgctagaatttcgcaagtgccaacaattcaagtggatctcaatt
actggtctttgccactcaacttcaatggaacgagtgtaccaacaatatcttctccctcct
atactactatggttttgtcaacactggtatttcaaaatgtgattacagatatttttgccg
acttgaacatcacaccaaacagcacggtgttgtacgataatatgtatccacccgatttta
ctgcttggagagatgcgttttccgttttaccgggtattcggtttgttccaatggaaacaa
ctgttttgcgcatgagagctcaaataacacagctcagaatggcctctataaactcgttga
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTGGTCGCTGAACTTGCTAGAAT 86 283 452 Antisense
GGATCTCAATTACTGGTCTTTGCCA 38 513 501 Antisense
GTCTTTGCCACTCAACTTCAATGGA 458 469 516 Antisense
GAGTGTACCAACAATATCTTCTCCC 434 401 543 Antisense
TCCCTCCTATACTACTATGGTTTTG 521 595 564 Antisense
TTTGCCGACTTGAACATCACACCAA 300 669 625 Antisense
ATATGTATCCACCCGATTTTACTGC 109 21 671 Antisense
TGGAGAGATGCGTTTTCCGTTTTAC 454 549 697 Antisense
ACAACTGTTTTGCGCATGAGAGCTC 118 113 748 Antisense
ATAACACAGCTCAGAATGGCCTCTA 102 25 775 Antisense
GAATGGCCTCTATAAACTCGTTGAT 488 331 788 Antisense
Sequence Source Affymetrix Proprietary Database