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[176724_s_at]

Description C36B7.6 /REP_DB=WormBase Gene ID /WP=CE04177 /GB=AAK68233.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 63      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 627.7
(1)
P 		567.6
(-0.9)
P 		691.8
(3)
P 		499
(-3)
P 		193
B 687
(3)
P 		550.7
(-2)
P 		521.8
(-3)
P 		611.7
(0.3)
P 		165
C 567.6
(-1.4)
P 		518.7
(-3)
P 		697.8
(3)
P 		551.8
(-1.9)
P 		179
avr 627.4
(2.4) 		545.7
(-3) 		637.1
(3) 		554.2
(-2.4) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 683.7
(3)
P 		552
(0.1)
P 		485.8
(-1.3)
P 		409.2
(-3)
P 		430.2
(-2.5)
P 		453.3
(-2)
P 		275
B 543.4
(3)
P 		529.4
(2.4)
P 		428.8
(-1.6)
P 		393.5
(-3)
P 		421.5
(-1.9)
P 		415.6
(-2.1)
P 		150
C 643.6
(3)
P 		530.5
(0.1)
P 		495.1
(-0.8)
P 		549.4
(0.6)
P 		477.8
(-1.2)
P 		407
(-3)
P 		237
avr 623.6
(3) 		537.3
(0.4) 		469.9
(-1.7) 		450.7
(-2.2) 		443.2
(-2.5) 		425.3
(-3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 228.5
(3)
P 		123.2
(-1.1)
P 		180.8
(1.2)
P 		73
(-3)
P 		156
B 219.1
(3)
P 		136
(-2.1)
P 		120.9
(-3)
P 		130.3
(-2.4)
P 		98
C 187.9
(0.8)
P 		149.1
(-0.8)
P 		243.2
(3)
P 		93
(-3)
P 		150
avr 211.8
(3) 		136.1
(-1) 		181.6
(1.4) 		98.8
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 126
(-1.6)
P 		196.3
(3)
P 		105.8
(-2.9)
P 		103.8
(-3)
P 		129.8
(-1.3)
P 		110.4
(-2.6)
P 		93
B 189.1
(3)
P 		176.2
(2.1)
P 		104.1
(-3)
P 		104.2
(-3)
P 		171.2
(1.7)
P 		155
(0.6)
P 		85
C 238.6
(3)
P 		161.9
(-0.6)
P 		126
(-2.3)
P 		110.5
(-3)
P 		154.6
(-0.9)
P 		136.2
(-1.8)
P 		128
avr 184.6
(3) 		178.1
(2.5) 		112
(-2.6) 		106.2
(-3) 		151.9
(0.5) 		133.9
(-0.9) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176724_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16046
Sequence Type Exemplar sequence
Representative Public ID C36B7.6 NCBI
Target Description C36B7.6 /REP_DB=WormBase Gene ID /WP=CE04177 /GB=AAK68233.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076795 NCBI Caenorhabditis elegans C36B7.6 (C36B7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000024847 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7097566:7100285:-1 11/11 None
SNAP00000024836 ENSEMBL cdna:SNAP chromosome:CEL140:X:7097707:7100285:-1 11/11 None
C36B7.6.1 ENSEMBL cdna:known chromosome:CEL140:X:7097411:7100286:-1 gene:C36B7.6 11/11 None
C36B7.6.2 ENSEMBL cdna:known chromosome:CEL140:X:7097411:7100288:-1 gene:C36B7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7097705-7100599(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36B7.6
Entrez Gene 180976 Entrez gene
SwissProt Q966P8 EMBL-EBI
WormBase CE34267 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7858.1.S1_AT similar to cleft lip and palate associated transmembrane protein 1 cfa
CANINE_2:CFAAFFX.7860.1.S1_S_AT similar to cleft lip and palate associated transmembrane protein 1 cfa
DROSOPHILA_2:1623434_AT dm
DROSGENOME1:141359_AT dm
HG-U133A:201640_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133A_2:201640_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133_PLUS_2:201640_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133_PLUS_2:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133A:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HG-FOCUS:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133A_2:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_W68721_F_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_W68721_R_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_R56100_F_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_H16171_F_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:G4502896_3P_A_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:G13436079_3P_A_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:211136_3P_S_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:201640_3P_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U95AV2:41413_AT cleft lip and palate associated transmembrane protein 1 hs
MU11KSUBA:D67067_S_AT cleft lip and palate associated transmembrane protein 1 mm
MG-U74AV2:95713_AT cleft lip and palate associated transmembrane protein 1 mm
MOE430A:1416883_AT cleft lip and palate associated transmembrane protein 1 mm
MOUSE430A_2:1416883_AT cleft lip and palate associated transmembrane protein 1 mm
MOUSE430_2:1416883_AT cleft lip and palate associated transmembrane protein 1 mm
RG-U34C:RC_AI175271_AT cleft lip and palate associated transmembrane protein 1 (predicted) rn
RAE230A:1371473_AT cleft lip and palate associated transmembrane protein 1 (predicted) rn
RAT230_2:1371473_AT cleft lip and palate associated transmembrane protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_509196 C36B7.6 [Caenorhabditis elegans] gb|AAK68233.2| Hypothetical protein C36B7.6 [Caenorhabditis elegans] 0.0
blast CAE65840 Hypothetical protein CBG10971 [Caenorhabditis briggsae] 0.0
blast CAE59659 Hypothetical protein CBG03077 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008429 EMBL-EBI Cleft lip and palate transmembrane 1 1.0E-126
Pfam IPR008429 EMBL-EBI Cleft lip and palate transmembrane 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509196.2 5 323-345,358-380,445-467,472-494,509-531
C36B7.6.1 5 323-345,358-380,445-467,472-494,509-531
C36B7.6.2 5 323-345,358-380,445-467,472-494,509-531
GENEFINDER00000024847 4 323-345,358-380,445-467,472-494
SNAP00000024836 5 323-345,358-380,443-465,470-492,507-529
Sequence
Target Sequence 
>C. ELEGANS:176724_S_AT
gccggtctcctcatagaatgctggaaaatccccaaagttatgaatgtagagtttgataga
accaatccgattcttggcgttattcctagactgaagttcagcgacaaaggatcctacgtg
gaaagtgacacaaaagtttatgatcagatggctttccgctatctatcgtgggtacttttc
ccactgctcgttgggtatgcagtatactcaatcatttacgtggaacaacgaggatggtac
tcctgggttcttaacatgctttacggatatcttctcatgtttggcttcatcacaatgaca
ccacaacttttcatcaattacaaactcaagtcagtggctcatctaccgtggagaatgttg
acgtacaaattcatcaacacgtttattgatgatttgttcgcttttgtgatcaagatgccg
ctgttatatcgcattggatgtttcagagatgatattattttcctgatctacttgtatcaa
cgctggatctaccgcgttgacccaactcgtatgaacgaatatggaacatcaggagagcat
gaacatggagttccggagccagtcgaaggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGTCTCCTCATAGAATGCTGGA 432 283 1399 Antisense
ATCCGATTCTTGGCGTTATTCCTAG 9 39 1463 Antisense
TGATCAGATGGCTTTCCGCTATCTA 175 565 1539 Antisense
CCGCTATCTATCGTGGGTACTTTTC 432 263 1554 Antisense
ACTTTTCCCACTGCTCGTTGGGTAT 403 101 1572 Antisense
TGGTACTCCTGGGTTCTTAACATGC 665 549 1633 Antisense
TTACGGATATCTTCTCATGTTTGGC 451 683 1659 Antisense
CAGTGGCTCATCTACCGTGGAGAAT 604 207 1730 Antisense
CTTGTATCAACGCTGGATCTACCGC 78 219 1869 Antisense
CCGCGTTGACCCAACTCGTATGAAC 24 263 1890 Antisense
GAGTTCCGGAGCCAGTCGAAGGCAC 611 395 1946 Antisense
Sequence Source Affymetrix Proprietary Database