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[176723_at]

Description C18C4.1 /REP_DB=WormBase Gene ID /WP=CE06847 /GB=AAK52176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 14      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 92.6
(1.8)
P 		67.5
(-1.5)
A 		55.7
(-3)
A 		101.9
(3)
P 		46
B 132.3
(3)
P 		14.8
(-3)
A 		76.5
(0.2)
A 		79.8
(0.3)
A 		118
C 86.9
(-0.7)
P 		80.8
(-1)
P 		45.1
(-3)
A 		152.3
(3)
P 		107
avr 103.9
(2.2) 		54.4
(-3) 		59.1
(-2.5) 		111.3
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 58.9
(1.5)
A 		74.4
(3)
A 		46.3
(0.3)
A 		12.6
(-3)
A 		29.3
(-1.4)
A 		32.6
(-1.1)
A 		62
B 70.6
(1)
A 		67.3
(0.8)
M 		89.6
(2.7)
P 		93.7
(3)
A 		23.1
(-3)
A 		53.4
(-0.4)
A 		71
C 49.5
(-0.6)
P 		68.2
(2.5)
P 		59.5
(1)
A 		71.5
(3)
A 		49.6
(-0.6)
A 		34.8
(-3)
P 		37
avr 59.7
(1.3) 		70
(3) 		65.1
(2.2) 		59.3
(1.2) 		34
(-3) 		40.3
(-2) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 33.7
(3)
P 		14.7
(-3)
A 		14.6
(-3)
A 		14.9
(-2.9)
P 		19
B 42.2
(3)
P 		3.6
(-3)
A 		17.7
(-0.8)
A 		17
(-0.9)
A 		39
C 28.8
(3)
P 		23.2
(0.4)
P 		15.7
(-3)
A 		25.7
(1.6)
P 		13
avr 34.9
(3) 		13.8
(-3) 		16
(-2.4) 		19.2
(-1.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.9
(-1)
A 		26.5
(3)
A 		10.1
(-1.2)
A 		3.2
(-3)
A 		8.8
(-1.6)
A 		7.9
(-1.8)
A 		23
B 24.6
(2.9)
A 		22.4
(2.1)
M 		21.8
(1.8)
P 		24.8
(3)
A 		9.4
(-3)
A 		19.9
(1.1)
A 		15
C 18.3
(1.4)
P 		20.8
(3)
P 		15.1
(-0.7)
A 		14.4
(-1.2)
A 		16
(-0.1)
A 		11.6
(-3)
P 		9
avr 17.9
(0.3) 		23.2
(3) 		15.7
(-0.8) 		14.1
(-1.6) 		11.4
(-3) 		13.1
(-2.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12292
Sequence Type Exemplar sequence
Representative Public ID C18C4.1 NCBI
Target Description C18C4.1 /REP_DB=WormBase Gene ID /WP=CE06847 /GB=AAK52176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072065 NCBI Caenorhabditis elegans C18C4.1 (C18C4.1) mRNA, complete cds. 11/11 None
SNAP00000035604 ENSEMBL cdna:SNAP chromosome:CEL140:V:5564424:5566827:1 11/11 None
GENEFINDER00000035609 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5561495:5566827:1 11/11 None
C18C4.1 ENSEMBL cdna:known chromosome:CEL140:V:5564126:5566827:1 gene:C18C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5564125-5566827(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18C4.1
Entrez Gene 182776 Entrez gene
SwissProt Q18083 EMBL-EBI
WormBase CE36271 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK52176 Hypothetical protein C18C4.1 [Caenorhabditis elegans] ref|NP_504466.2| C18C4.1 [Caenorhabditis elegans] 0.0
blast AAK52176 Hypothetical protein C18C4.1 [Caenorhabditis elegans] ref|NP_504466.2| C18C4.1 [Caenorhabditis elegans] 1.0E-145
blast CAE64614 Hypothetical protein CBG09371 [Caenorhabditis briggsae] 1.0E-136
blast CAE64614 Hypothetical protein CBG09371 [Caenorhabditis briggsae] 1.0E-106
blast CAE64614 Hypothetical protein CBG09371 [Caenorhabditis briggsae] 2.0E-77
Sequence
Target Sequence 
>C. ELEGANS:176723_AT
caatcttggatttgtctgctccaaacaatccgactacatatgggagaaggaatcgaaatt
caaagagccaactatctaacgcaatgcttgattccaaaagaaatggaagaagtacgtgcg
aattggatgcaagtcgaaaattacgggtttcgaaaagccgggcttttattgtgtcaatca
gcttttgacaactactcggaacttttgaaaactcataatttatcaatgactcttccaatt
gaagcaaacaagactagtgatagttttgttgcattatcagatcaaattatgcaggcactg
gacaaaacaatacaatcctacactcccgaagaaggattcttgaatttaattcaagaaatt
aaagactttgtgataaagttcttagtcgttgaagtatgccctccgcttattcggaaatct
tttatcgatggattaatccacatgctttgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTTGGATTTGTCTGCTCCAAA 364 181 739 Antisense
CTGCTCCAAACAATCCGACTACATA 474 237 754 Antisense
GAGCCAACTATCTAACGCAATGCTT 193 385 803 Antisense
AAAGCCGGGCTTTTATTGTGTCAAT 488 123 892 Antisense
AGCTTTTGACAACTACTCGGAACTT 578 63 918 Antisense
ATAATTTATCAATGACTCTTCCAAT 682 25 953 Antisense
CAAAACAATACAATCCTACACTCCC 348 191 1041 Antisense
CCTACACTCCCGAAGAAGGATTCTT 247 269 1055 Antisense
TTAGTCGTTGAAGTATGCCCTCCGC 97 661 1120 Antisense
ATGCCCTCCGCTTATTCGGAAATCT 257 41 1134 Antisense
ATGGATTAATCCACATGCTTTGTAA 226 51 1166 Antisense
Sequence Source Affymetrix Proprietary Database