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[176722_at]

Description C01G8.9 /REP_DB=WormBase Gene ID /WP=CE25747 /GB=AAB37646.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_total > 17      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 629.2
(3)
P 		421.4
(-0.2)
P 		235.8
(-3)
P 		409.6
(-0.3)
P 		393
B 476.6
(3)
P 		302.3
(-1.8)
P 		259.1
(-3)
P 		411.1
(1.2)
P 		218
C 567.9
(3)
P 		234.2
(-3)
P 		272
(-2.3)
P 		392.5
(-0.2)
P 		334
avr 557.9
(3) 		319.3
(-1.7) 		255.6
(-3) 		404.4
(-0) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 224.5
(2.7)
P 		217.7
(2.3)
P 		231.4
(3)
P 		109.5
(-3)
P 		123.8
(-2.3)
A 		195
(1.2)
P 		122
B 412.5
(3)
P 		208.1
(-0.8)
P 		274.3
(0.4)
P 		209
(-0.8)
P 		89.5
(-3)
P 		226.2
(-0.5)
P 		323
C 426.9
(3)
P 		185.2
(-1.6)
P 		263.7
(-0.1)
P 		114.3
(-3)
P 		169.5
(-1.9)
P 		184.2
(-1.7)
P 		313
avr 354.6
(3) 		203.7
(-1) 		256.5
(0.4) 		144.3
(-2.6) 		127.6
(-3) 		201.8
(-1) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 229.1
(3)
P 		91.5
(-1.9)
P 		61.7
(-2.9)
P 		60
(-3)
P 		169
B 152
(3)
P 		74.7
(-2)
P 		60
(-3)
P 		87.6
(-1.2)
P 		92
C 188
(3)
P 		67.3
(-2.9)
P 		94.8
(-1.6)
P 		66.2
(-3)
P 		122
avr 189.7
(3) 		77.8
(-2.7) 		72.2
(-3) 		71.3
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 41.4
(-1.4)
P 		77.4
(3)
P 		50.4
(-0.3)
P 		27.8
(-3)
P 		37.4
(-1.8)
A 		47.5
(-0.6)
P 		50
B 143.5
(3)
P 		69.3
(-1.2)
P 		66.6
(-1.3)
P 		55.4
(-1.9)
P 		36.4
(-3)
P 		84.3
(-0.3)
P 		107
C 158.2
(3)
P 		56.5
(-1.5)
P 		67.1
(-1)
P 		23
(-3)
P 		54.9
(-1.6)
P 		61.7
(-1.3)
P 		135
avr 114.4
(3) 		67.7
(-0.5) 		61.4
(-1) 		35.4
(-3) 		42.9
(-2.4) 		64.5
(-0.8) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2107
Sequence Type Exemplar sequence
Representative Public ID C01G8.9 NCBI
Target Description C01G8.9 /REP_DB=WormBase Gene ID /WP=CE25747 /GB=AAB37646.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059161(11), NM_182023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059161 NCBI Caenorhabditis elegans C01G8.9a (C01G8.9) mRNA, complete cds. 11/11 None
NM_182023 NCBI Caenorhabditis elegans C01G8.9b (C01G8.9) mRNA, complete cds. 11/11 None
SNAP00000016696 ENSEMBL cdna:SNAP chromosome:CEL140:I:5301771:5307152:-1 11/11 None
C01G8.9a ENSEMBL cdna:known chromosome:CEL140:I:5300984:5310917:-1 gene:C01G8.9 11/11 None
C01G8.9b ENSEMBL cdna:known chromosome:CEL140:I:5300984:5304788:-1 gene:C01G8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5301770-5310917(-) 99.04 100.0
Public Domain and Genome References
Ensembl C01G8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37646 Hypothetical protein C01G8.9a [Caenorhabditis elegans] ref|NP_491562.2| C01G8.9a [Caenorhabditis elegans] 0.0
blast T29265 hypothetical protein C01G8.7 - Caenorhabditis elegans 0.0
blast CAE66945 Hypothetical protein CBG12337 [Caenorhabditis briggsae] 0.0
blast AAO38675 Hypothetical protein C01G8.9b [Caenorhabditis elegans] ref|NP_871823.1| C01G8.9b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.3.ARID domain All alpha proteins; DNA/RNA-binding 3-helical bundle; ARID-like; ARID domain 4.99997305055738E-41
Pfam IPR001606 EMBL-EBI ARID (AT-rich interaction domain) protein 3.6E-55
Sequence
Target Sequence 
>C. ELEGANS:176722_AT
actcgccttctacaattcacaatgagccaattgatggattcccgagtggctggaatgatt
gccgacacactttacgaaattcaagaatttgtcaaagagtttggcgaagacgttccagaa
ccactgaaaatcacatattctgaaggatatcaaccgagccagacggacgacaaggaatcg
acatctacaaactcggatgctgcagcaccaccacaaaaatcgacgagttcttcgcccaag
ccagtcgaagaatcagcagcgacaacttcggtaaatgttcacgggaatggtacattggaa
tgcgaaacaagtagtagaccattgtcgtcagaagctgcagcggccgtcattactccatat
gaaaatcatcataaaaatgaagaagaagaggatttgaaaaaggaaattgacgaaggggaa
tcgtgtgatggatatgatacagaagctattcgattatcgcaaaaacggtctgctgctgca
cttattgatgagcaatcccgttctccgccaccagcgaaaagagcccatctttccaacgga
ttcgataaatcaaaatcttcagtttcaacgaacggaacactgggtgatgcttctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGCCTTCTACAATTCACAATGA 516 99 4669 Antisense
ATTGATGGATTCCCGAGTGGCTGGA 598 3 4698 Antisense
GAATGATTGCCGACACACTTTACGA 117 331 4721 Antisense
CTACAAACTCGGATGCTGCAGCACC 655 225 4853 Antisense
CAAAAATCGACGAGTTCTTCGCCCA 695 189 4882 Antisense
CGCCCAAGCCAGTCGAAGAATCAGC 87 257 4901 Antisense
GAATCAGCAGCGACAACTTCGGTAA 622 327 4918 Antisense
ATTGTCGTCAGAAGCTGCAGCGGCC 141 5 4989 Antisense
AAAACGGTCTGCTGCTGCACTTATT 257 131 5130 Antisense
GTTCTCCGCCACCAGCGAAAAGAGC 495 443 5168 Antisense
GGAACACTGGGTGATGCTTCTCAAA 248 529 5242 Antisense
Sequence Source Affymetrix Proprietary Database