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[176721_at]

Description C18C4.8 /REP_DB=WormBase Gene ID /WP=CE06853 /GB=AAK52180.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 31.8
(3)
A 		20.9
(0.7)
A 		3.8
(-3)
A 		26.1
(1.8)
A 		28
B 47.4
(2.7)
A 		35.1
(-1.2)
A 		48.5
(3)
A 		29.4
(-3)
A 		19
C 38.5
(3)
A 		23.9
(-0.7)
A 		14.9
(-3)
A 		35.8
(2.3)
A 		24
avr 39.2
(3) 		26.6
(-1.5) 		22.4
(-3) 		30.4
(-0.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 101.8
(3)
P 		21.5
(-1.9)
A 		24.2
(-1.7)
A 		4.5
(-2.9)
A 		38.7
(-0.8)
A 		3.1
(-3)
A 		99
B 27
(-0.7)
A 		24.5
(-1)
A 		6.7
(-3)
A 		59.7
(3)
A 		10.8
(-2.5)
A 		19
(-1.6)
A 		53
C 47.1
(3)
P 		46.1
(2.9)
A 		5.4
(-2.8)
A 		18
(-1)
A 		3.6
(-3)
A 		9.5
(-2.2)
A 		44
avr 58.6
(3) 		30.7
(-0.5) 		12.1
(-2.8) 		27.4
(-0.9) 		17.7
(-2.1) 		10.5
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.6
(3)
A 		4.5
(-1)
A 		1
(-3)
A 		3.8
(-1.4)
A 		11
B 15.1
(3)
A 		8.7
(-1.4)
A 		11.2
(0.3)
A 		6.3
(-3)
A 		9
C 12.7
(3)
A 		6.9
(-1.6)
A 		5.2
(-3)
A 		6
(-2.4)
A 		8
avr 13.1
(3) 		6.7
(-2) 		5.8
(-2.7) 		5.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18.8
(3)
P 		7.6
(-0.7)
A 		5.3
(-1.5)
A 		1.1
(-2.9)
A 		11.7
(0.6)
A 		0.7
(-3)
A 		18
B 9.4
(0.3)
A 		8.2
(-0.2)
A 		1.6
(-3)
A 		15.8
(3)
A 		4.4
(-1.8)
A 		7.1
(-0.7)
A 		14
C 17.5
(3)
P 		14.1
(1.7)
A 		1.4
(-2.9)
A 		3.6
(-2.1)
A 		1.2
(-3)
A 		3.2
(-2.3)
A 		16
avr 15.2
(3) 		10
(0.5) 		2.8
(-3) 		6.8
(-1.1) 		5.8
(-1.5) 		3.7
(-2.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11389
Sequence Type Exemplar sequence
Representative Public ID C18C4.8 NCBI
Target Description C18C4.8 /REP_DB=WormBase Gene ID /WP=CE06853 /GB=AAK52180.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072068(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072068 NCBI Caenorhabditis elegans C18C4.9 (C18C4.9) mRNA, complete cds. 9/11 A 
C18C4.9 ENSEMBL cdna:known chromosome:CEL140:V:5570804:5573128:-1 gene:C18C4.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035605 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035612 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5570901-5571367(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18C4.9
Entrez Gene 182780 Entrez gene
SwissProt Q18086 EMBL-EBI
WormBase CE29586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK52180 Hypothetical protein C18C4.9 [Caenorhabditis elegans] ref|NP_504469.1| C18C4.9 [Caenorhabditis elegans] 0.0
blast CAE64612 Hypothetical protein CBG09369 [Caenorhabditis briggsae] 1.0E-175
blast T34112 hypothetical protein C18C4.9 - Caenorhabditis elegans 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:176721_AT
gaatcactgcattaaaaaacccccagaaatattttcaatcatattttaccaattccctcc
tgtttcagacggctgcccattccacgcacatcttcttgaccagtttgcaactgcaatgat
tgaaagaactttggaatggggagaaaagaaagatcgaacagagacaactcaaagaggatg
gacgaaaattgtattattcgtgacagaacaactgaaggaaggttttcaggatgaacagaa
gagggcaagacggataaaggctcaaattaaaaccagcgcgggaagcagttctttcgaaat
atcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACTGCATTAAAAAACCCCCA 696 321 15 Antisense
AATCATATTTTACCAATTCCCTCCT 234 171 51 Antisense
ACGCACATCTTCTTGACCAGTTTGC 575 91 98 Antisense
ACATCTTCTTGACCAGTTTGCAACT 68 107 102 Antisense
GACCAGTTTGCAACTGCAATGATTG 21 385 112 Antisense
GAAAGATCGAACAGAGACAACTCAA 175 361 162 Antisense
GTATTATTCGTGACAGAACAACTGA 434 453 205 Antisense
AGGGCAAGACGGATAAAGGCTCAAA 69 59 256 Antisense
AATTAAAACCAGCGCGGGAAGCAGT 706 167 279 Antisense
CGCGGGAAGCAGTTCTTTCGAAATA 116 255 291 Antisense
GAAGCAGTTCTTTCGAAATATCAAC 268 341 296 Antisense
Sequence Source Affymetrix Proprietary Database