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[176719_at]

Description C18C4.6 /REP_DB=WormBase Gene ID /WP=CE06851 /GB=AAK52178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 9.4
(-1.8)
A 		3.8
(-3)
A 		6.5
(-2.4)
A 		31.7
(3)
A 		28
B 13.7
(1.9)
A 		15.8
(3)
A 		15.9
(3)
A 		3.9
(-3)
A 		12
C 4.9
(-1.8)
A 		2.2
(-3)
A 		16.1
(3)
A 		13.3
(1.8)
A 		14
avr 9.3
(-1.7) 		7.3
(-3) 		12.8
(0.7) 		16.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.5
(-3)
A 		24.5
(1.9)
A 		29.5
(3)
A 		5.2
(-2.2)
A 		20.6
(1.1)
A 		2.7
(-2.7)
A 		28
B 0.7
(-3)
A 		21.4
(3)
A 		1.1
(-2.9)
A 		1.8
(-2.7)
A 		11
(-0)
A 		13
(0.6)
A 		21
C 2.5
(-2.9)
A 		31.9
(3)
A 		2.2
(-3)
A 		23.3
(1.3)
A 		2.9
(-2.9)
A 		5.4
(-2.4)
A 		30
avr 1.6
(-3) 		25.9
(3) 		10.9
(-0.7) 		10.1
(-0.9) 		11.5
(-0.6) 		7
(-1.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.4
(1.1)
A 		0.8
(-3)
A 		1.7
(-1.6)
A 		4.6
(3)
A 		4
B 4.4
(3)
A 		3.9
(2.2)
A 		3.7
(1.8)
A 		0.8
(-3)
A 		4
C 1.6
(-1.8)
A 		0.6
(-3)
A 		5.6
(3)
A 		2.2
(-1.1)
A 		5
avr 3.1
(1.1) 		1.8
(-3) 		3.7
(3) 		2.5
(-0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-3)
A 		8.7
(3)
A 		6.4
(1.4)
A 		1.3
(-2.3)
A 		6.2
(1.2)
A 		0.7
(-2.7)
A 		8
B 0.3
(-3)
A 		7.1
(3)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		4.5
(0.7)
A 		4.9
(1.1)
A 		7
C 0.9
(-2.8)
A 		9.7
(3)
A 		0.6
(-3)
A 		4.7
(-0.3)
A 		1
(-2.7)
A 		1.8
(-2.2)
A 		9
avr 0.5
(-3) 		8.5
(3) 		2.4
(-1.6) 		2.2
(-1.7) 		3.9
(-0.5) 		2.5
(-1.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12411
Sequence Type Exemplar sequence
Representative Public ID C18C4.6 NCBI
Target Description C18C4.6 /REP_DB=WormBase Gene ID /WP=CE06851 /GB=AAK52178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072066 NCBI Caenorhabditis elegans C18C4.6 (C18C4.6) mRNA, complete cds. 11/11 None
SNAP00000035603 ENSEMBL cdna:SNAP chromosome:CEL140:V:5564132:5569807:-1 9/11 None
GENEFINDER00000035612 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5566901:5573108:-1 11/11 None
C18C4.6 ENSEMBL cdna:known chromosome:CEL140:V:5566901:5567279:-1 gene:C18C4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5566900-5567279(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18C4.6
Entrez Gene 182777 Entrez gene
SwissProt Q18084 EMBL-EBI
WormBase CE06851 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK52180 Hypothetical protein C18C4.9 [Caenorhabditis elegans] ref|NP_504469.1| C18C4.9 [Caenorhabditis elegans] 0.0
blast CAE64612 Hypothetical protein CBG09369 [Caenorhabditis briggsae] 1.0E-165
blast T34112 hypothetical protein C18C4.9 - Caenorhabditis elegans 1.0E-151
blast AAK52179 Hypothetical protein C18C4.7 [Caenorhabditis elegans] ref|NP_504468.1| C18C4.7 [Caenorhabditis elegans] 2.0E-91
blast AAK52178 Hypothetical protein C18C4.6 [Caenorhabditis elegans] ref|NP_504467.1| C18C4.6 [Caenorhabditis elegans] 1.0E-38
blast AAK52178 Hypothetical protein C18C4.6 [Caenorhabditis elegans] ref|NP_504467.1| C18C4.6 [Caenorhabditis elegans] 5.0E-33
blast CAE64613 Hypothetical protein CBG09370 [Caenorhabditis briggsae] 9.0E-33
blast CAE64613 Hypothetical protein CBG09370 [Caenorhabditis briggsae] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:176719_AT
gagcgggagctctgagataatgtcaatgcatgaccaaattgttcgtttttctgcaagttc
ttctgctccagaagacacgactacaaactctttgatggcagaaaaagaggcgagtcttgt
tgtgagactcgaacaagaactcacacaagctcaaatctgcaaccatcgtctgaatcaaca
acttaaagttcttgcaaatagtagtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGGGAGCTCTGAGATAATGTCA 642 385 15 Antisense
GAGCTCTGAGATAATGTCAATGCAT 684 387 21 Antisense
TGCATGACCAAATTGTTCGTTTTTC 33 579 41 Antisense
TTCTGCTCCAGAAGACACGACTACA 204 693 75 Antisense
ACGACTACAAACTCTTTGATGGCAG 478 91 91 Antisense
AAAAGAGGCGAGTCTTGTTGTGAGA 1 133 117 Antisense
GACTCGAACAAGAACTCACACAAGC 375 375 140 Antisense
ACAAGAACTCACACAAGCTCAAATC 590 111 147 Antisense
AATCTGCAACCATCGTCTGAATCAA 51 169 168 Antisense
AACCATCGTCTGAATCAACAACTTA 589 147 175 Antisense
AAAGTTCTTGCAAATAGTAGTGACA 525 119 199 Antisense
Sequence Source Affymetrix Proprietary Database