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[176717_at]

Description C18C4.9 /REP_DB=WormBase Gene ID /WP=CE06854 /GB=AAK52181.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      6grp_total > 24      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 257.5
(3)
P 		74.5
(-2.7)
A 		65.9
(-3)
A 		119.7
(-1.3)
P 		192
B 271.6
(3)
P 		133.9
(-1.9)
A 		104.5
(-3)
A 		133.7
(-2)
P 		167
C 338.2
(3)
P 		62.7
(-3)
A 		92.1
(-2.4)
A 		184.8
(-0.3)
A 		276
avr 289.1
(3) 		90.4
(-2.9) 		87.5
(-3) 		146.1
(-1.3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 308.6
(3)
P 		217.2
(0.7)
P 		188.4
(0)
P 		101.7
(-2.2)
P 		106.1
(-2)
P 		67.9
(-3)
A 		241
B 315.8
(3)
P 		211.1
(0.4)
P 		166.6
(-0.6)
P 		96.6
(-2.4)
P 		84.9
(-2.6)
P 		70.1
(-3)
P 		246
C 262.7
(3)
P 		256.2
(2.8)
P 		172.6
(0)
A 		171.6
(-0)
P 		90.7
(-2.7)
A 		81.8
(-3)
P 		181
avr 295.7
(3) 		228.2
(1.2) 		175.9
(-0.2) 		123.3
(-1.7) 		93.9
(-2.4) 		73.3
(-3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 93.8
(3)
P 		16.2
(-3)
A 		17.2
(-2.9)
A 		17.5
(-2.9)
P 		78
B 86.6
(3)
P 		33.1
(-2.1)
A 		24.2
(-3)
A 		28.5
(-2.6)
P 		62
C 112
(3)
P 		18
(-3)
A 		32.1
(-2.1)
A 		31.2
(-2.2)
A 		94
avr 97.5
(3) 		22.4
(-3) 		24.5
(-2.8) 		25.7
(-2.7) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 56.9
(1)
P 		77.3
(3)
P 		41
(-0.6)
P 		25.8
(-2.1)
P 		32
(-1.5)
P 		16.5
(-3)
A 		61
B 109.9
(3)
P 		70.3
(0.2)
P 		40.5
(-1.9)
P 		25.6
(-3)
P 		34.5
(-2.4)
P 		26.2
(-3)
P 		84
C 97.4
(3)
P 		78.2
(1.4)
P 		43.9
(-1.6)
A 		34.5
(-2.4)
P 		29.4
(-2.8)
A 		27.4
(-3)
P 		70
avr 88.1
(3) 		75.3
(1.8) 		41.8
(-1.3) 		28.6
(-2.5) 		32
(-2.2) 		23.4
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11766
Sequence Type Exemplar sequence
Representative Public ID C18C4.9 NCBI
Target Description C18C4.9 /REP_DB=WormBase Gene ID /WP=CE06854 /GB=AAK52181.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072068 NCBI Caenorhabditis elegans C18C4.9 (C18C4.9) mRNA, complete cds. 11/11 A 
SNAP00000035605 ENSEMBL cdna:SNAP chromosome:CEL140:V:5571037:5573108:-1 11/11 None
GENEFINDER00000035612 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5566901:5573108:-1 11/11 None
C18C4.9 ENSEMBL cdna:known chromosome:CEL140:V:5570804:5573128:-1 gene:C18C4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5571634-5573108(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18C4.9
Entrez Gene 182780 Entrez gene
SwissProt Q18086 EMBL-EBI
WormBase CE29586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK52180 Hypothetical protein C18C4.9 [Caenorhabditis elegans] ref|NP_504469.1| C18C4.9 [Caenorhabditis elegans] 0.0
blast CAE64612 Hypothetical protein CBG09369 [Caenorhabditis briggsae] 1.0E-175
blast CAE64612 Hypothetical protein CBG09369 [Caenorhabditis briggsae] 1.0E-166
blast CAE64612 Hypothetical protein CBG09369 [Caenorhabditis briggsae] 1.0E-165
blast T34112 hypothetical protein C18C4.9 - Caenorhabditis elegans 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:176717_AT
aatcacctttggctacaggctgtccacgtcagaatttgggctctccaggcaatcggcgat
cagtggattcaacaaattcggatttacttgaagcagtcacacctcgaagccatatatctg
tgaaacgtacagtcagcagcgggacagagcatgctccagatcatgcgaatatgcaaaaga
gtagctccttgaagtttaccagaccaggtgttcggagtgagacaaaggagacaactccat
cgactagctcaaatccaacaatgttcccatgcattcatcaatttcttcaccttacgcagc
ctcaaatattgtttgtgaggaaaacttggaatcatgcaagaaatcaaggcgccctggaac
cagcgatcagtatctttcgaaactcgtttttcaaaaatcccgaaattcggcaaatgataa
tgtttggaactaaaaatgaaggacatgaaaggttaaagaaacatgctcaactatttactg
tacttatggatgacctaattgcaaatcttgattcaccgtcagctacagtagctggactcc
gagaggctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACCTTTGGCTACAGGCTGTCC 399 169 311 Antisense
AGAATTTGGGCTCTCCAGGCAATCG 624 73 341 Antisense
AGTCACACCTCGAAGCCATATATCT 498 61 405 Antisense
AGCTCCTTGAAGTTTACCAGACCAG 74 79 493 Antisense
ACCAGACCAGGTGTTCGGAGTGAGA 13 85 508 Antisense
AGGAGACAACTCCATCGACTAGCTC 325 55 536 Antisense
ATGCATTCATCAATTTCTTCACCTT 545 43 579 Antisense
TTCACCTTACGCAGCCTCAAATATT 420 685 596 Antisense
GGAACCAGCGATCAGTATCTTTCGA 136 531 666 Antisense
GCAAATCTTGATTCACCGTCAGCTA 631 315 811 Antisense
AGTAGCTGGACTCCGAGAGGCTGGT 81 63 837 Antisense
Sequence Source Affymetrix Proprietary Database