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[176716_at]

Description F29D10.3 /REP_DB=WormBase Gene ID /WP=CE05762 /GB=CAB00094.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6.7
(-1.8)
A 		5.1
(-2.8)
A 		4.7
(-3)
A 		15.1
(3)
A 		10
B 3.2
(-3)
A 		6.5
(3)
A 		4.1
(-1.4)
A 		6.5
(3)
A 		3
C 4.3
(-2.5)
A 		4.9
(-2.3)
A 		2.2
(-3)
A 		26.1
(3)
A 		24
avr 4.7
(-2.5) 		5.5
(-2.1) 		3.7
(-3) 		15.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5
(0)
A 		6.9
(2.6)
A 		7.2
(3)
A 		3.7
(-1.8)
A 		6.6
(2.2)
A 		2.8
(-3)
A 		4
B 9.1
(3)
A 		6.8
(0.9)
A 		4.5
(-1.1)
A 		5.5
(-0.2)
A 		3.9
(-1.7)
A 		2.4
(-3)
A 		7
C 7.5
(3)
A 		4.3
(-3)
A 		5.2
(-1.3)
A 		4.9
(-1.9)
A 		4.3
(-3)
A 		7.2
(2.4)
A 		3
avr 7.2
(3) 		6
(0.7) 		5.6
(-0.1) 		4.7
(-1.8) 		4.9
(-1.5) 		4.1
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.4
(3)
A 		1.1
(-3)
A 		1.2
(-2.5)
A 		2.2
(2.1)
A 		1
B 1
(-3)
A 		1.6
(3)
A 		1
(-3)
A 		1.4
(1)
A 		1
C 1.4
(-2)
A 		1.4
(-2)
A 		0.8
(-3)
A 		4.4
(3)
A 		4
avr 1.6
(-0.9) 		1.4
(-1.6) 		1
(-3) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.9
(-2.3)
A 		2.4
(3)
A 		1.6
(0.2)
A 		1
(-1.9)
A 		2
(1.6)
A 		0.7
(-3)
A 		2
B 3.2
(3)
A 		2.3
(0.7)
A 		1.1
(-2.5)
A 		1.5
(-1.4)
A 		1.6
(-1.2)
A 		0.9
(-3)
A 		2
C 2.8
(3)
A 		1.3
(-2)
A 		1.3
(-2)
A 		1
(-3)
A 		1.4
(-1.7)
A 		2.4
(1.7)
A 		2
avr 2.3
(3) 		2
(1.4) 		1.3
(-2.5) 		1.2
(-3) 		1.7
(-0.3) 		1.3
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1146
Sequence Type Exemplar sequence
Representative Public ID F29D10.3 NCBI
Target Description F29D10.3 /REP_DB=WormBase Gene ID /WP=CE05762 /GB=CAB00094.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059991 NCBI Caenorhabditis elegans F29D10.3 (F29D10.3) mRNA, complete cds. 11/11 None
SNAP00000040557 ENSEMBL cdna:SNAP chromosome:CEL140:I:8849987:8851836:-1 11/11 None
GENEFINDER00000040561 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8851021:8852880:-1 11/11 None
F29D10.3 ENSEMBL cdna:known chromosome:CEL140:I:8851021:8852106:-1 gene:F29D10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8850951-8852037(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29D10.3
Entrez Gene 185119 Entrez gene
SwissProt Q19900 EMBL-EBI
WormBase CE38179 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 0.0
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 1.0E-128
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 1.0E-115
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 3.0E-47
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 4.0E-43
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 4.0E-33
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 6.0E-33
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 5.0E-32
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 5.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492392.2 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:176716_AT
taactatcaaccgactcgacagctcctcacaatcgattttggcttttaagagaaatgaga
ctaacgatacttgtcctgcgaaaagtttccaacttacattcgaatcatcttccagtgaat
ggattgatgagaaagggtttatttataacttaacattcacttccttcaataatcaatgga
tttttgattatacagttactcgttgcccagataattctgctctttggacaagaaatacca
gcaaaggcattttccatgtttgtgttgaaactcgtttatttccaaataataccaataatg
tctacgaagaggcacacaatctttgcatggaaccgaatggaatgggattaactgcaccat
ttgatagtactgaattgaaaagttttattgctaccaaaaaggatttgttcgctgcggggc
aaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTATCAACCGACTCGACAGCTC 672 637 107 Antisense
ACAGCTCCTCACAATCGATTTTGGC 166 109 125 Antisense
GAGACTAACGATACTTGTCCTGCGA 656 393 163 Antisense
CTTACATTCGAATCATCTTCCAGTG 466 221 199 Antisense
ATAACTTAACATTCACTTCCTTCAA 403 25 251 Antisense
GATTATACAGTTACTCGTTGCCCAG 308 429 292 Antisense
GTTGCCCAGATAATTCTGCTCTTTG 203 441 308 Antisense
ATACCAGCAAAGGCATTTTCCATGT 700 21 341 Antisense
GGCACACAATCTTTGCATGGAACCG 378 535 417 Antisense
GGGATTAACTGCACCATTTGATAGT 115 495 450 Antisense
GGATTTGTTCGCTGCGGGGCAAAAC 251 507 507 Antisense
Sequence Source Affymetrix Proprietary Database