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[176715_at]

Description C27D6.5 /REP_DB=WormBase Gene ID /WP=CE27739 /GB=AAK68206.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_total > 03      4grp_total > 22      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 381.3
(3)
P 		214.4
(-3)
P 		278.4
(-0.7)
P 		342
(1.6)
P 		167
B 342.8
(3)
P 		247.8
(-2.3)
P 		235.3
(-3)
P 		321.8
(1.8)
P 		108
C 350.5
(0.6)
P 		344.2
(0.4)
P 		261.9
(-3)
P 		408.5
(3)
P 		147
avr 358.2
(3) 		268.8
(-2.4) 		258.5
(-3) 		357.4
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 213.5
(1.8)
P 		234.2
(3)
P 		130.5
(-3)
P 		211.9
(1.7)
P 		194.9
(0.7)
P 		169.2
(-0.8)
P 		104
B 227.1
(1.1)
P 		298.8
(3)
P 		76.8
(-3)
A 		262.7
(2)
P 		144.5
(-1.2)
P 		210
(0.6)
P 		222
C 255.4
(3)
P 		203.4
(-1.3)
P 		240.9
(1.8)
P 		210.2
(-0.8)
A 		183.6
(-3)
P 		192.4
(-2.3)
P 		72
avr 232
(2.2) 		245.5
(3) 		149.4
(-3) 		228.3
(1.9) 		174.3
(-1.4) 		190.5
(-0.4) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 138.8
(3)
P 		46.5
(-3)
P 		72.8
(-1.3)
P 		50.1
(-2.8)
P 		92
B 109.3
(3)
P 		61.2
(-2.3)
P 		54.5
(-3)
P 		68.6
(-1.5)
P 		55
C 116
(3)
P 		99
(0.8)
P 		91.3
(-0.1)
P 		68.9
(-3)
P 		47
avr 121.4
(3) 		68.9
(-2.3) 		72.9
(-1.9) 		62.5
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 39.4
(-1.8)
P 		83.3
(3)
P 		28.4
(-3)
P 		53.8
(-0.2)
P 		58.8
(0.3)
P 		41.2
(-1.6)
P 		55
B 79
(1.5)
P 		99.5
(3)
P 		18.7
(-3)
A 		69.6
(0.8)
P 		58.7
(-0)
P 		78.3
(1.4)
P 		81
C 94.7
(3)
P 		62.1
(-0.7)
P 		61.3
(-0.8)
P 		42.3
(-3)
A 		59.4
(-1)
P 		64.4
(-0.5)
P 		52
avr 71
(1.6) 		81.6
(3) 		36.1
(-3) 		55.2
(-0.5) 		59
(0) 		61.3
(0.3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4171
Sequence Type Exemplar sequence
Representative Public ID C27D6.5 NCBI
Target Description C27D6.5 /REP_DB=WormBase Gene ID /WP=CE27739 /GB=AAK68206.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170989 NCBI Caenorhabditis elegans C27D6.4c (C27D6.4) mRNA, complete cds. 11/11 None
C27D6.4c ENSEMBL cdna:known chromosome:CEL140:II:5179022:5186255:-1 gene:C27D6.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170988 8/11 Cross Hyb Matching Probes B 
SNAP00000021326 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021342 3/11 Cross Hyb Matching Probes None
C27D6.4b.1 8/11 Cross Hyb Matching Probes None
C27D6.4b.2 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
259434 3 1 NM_170989 174963_at (11), 176715_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5183565-5185865(-) 100.0 100.0
Public Domain and Genome References
Ensembl C27D6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740987 C27D6.4c [Caenorhabditis elegans] gb|AAN63447.1| Hypothetical protein C27D6.4c [Caenorhabditis elegans] 1.0E-107
blast NP_740986 C27D6.4b [Caenorhabditis elegans] gb|AAN63446.1| Hypothetical protein C27D6.4b [Caenorhabditis elegans] 1.0E-94
blast NP_740985 C27D6.4a [Caenorhabditis elegans] gb|AAN63445.1| Hypothetical protein C27D6.4a [Caenorhabditis elegans] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 8.1E-15
Sequence
Target Sequence 
>C. ELEGANS:176715_AT
catgtactccacctgacgaaaagcctcatccttctatgctatttcctccactatctggaa
ttttcaatcagtcacctcacagtagcactggggaagactatcacggatcatcatcgggaa
gcccatcgtcgtcactttcatcgccgaacgaattcaaggatgagcctctcggactcgatg
ttcattttggaaattcacttttcaatgctccgttcagtccgtcggccacatcgtcgcaca
gcccgtcgtcttacggaatgatgcacggaagtcactcaatggcttcgcatcagctccacc
aacaacaactgtctcctttaccatccgtggctcatttctcccatagtcaccatcttcagc
atcatgtggttcagcatccatctcaggcttcactgcaaatgaacatgaaccaaatattct
ccggtcccagtcaccaatacgcttcttcaagtgtcccgcacactttcctcttcaaggatt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGTACTCCACCTGACGAAAAGCC 631 207 152 Antisense
AAAGCCTCATCCTTCTATGCTATTT 432 125 171 Antisense
TTCAATCAGTCACCTCACAGTAGCA 269 685 214 Antisense
TCATCATCGGGAAGCCCATCGTCGT 591 619 259 Antisense
GTCACTTTCATCGCCGAACGAATTC 215 461 282 Antisense
TCAAGGATGAGCCTCTCGGACTCGA 146 633 305 Antisense
CAACAACAACTGTCTCCTTTACCAT 543 189 451 Antisense
ATCATGTGGTTCAGCATCCATCTCA 458 29 512 Antisense
ATCCATCTCAGGCTTCACTGCAAAT 534 39 527 Antisense
TGAACCAAATATTCTCCGGTCCCAG 603 573 557 Antisense
CGCACACTTTCCTCTTCAAGGATTC 52 255 608 Antisense
Sequence Source Affymetrix Proprietary Database