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[176714_at]

Description R13D7.2 /REP_DB=WormBase Gene ID /WP=CE18149 /GB=AAK72299.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 12      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 924
1 2 3 4 range
A 878.4
(3)
P 		852.5
(2.8)
P 		534
(0.1)
P 		171.7
(-3)
P 		707
B 940.3
(3)
P 		930.4
(2.9)
P 		664.9
(0.9)
P 		148.1
(-3)
P 		792
C 1072
(3)
P 		1047.5
(2.8)
P 		653.3
(0.2)
P 		161.7
(-3)
P 		910
avr 963.6
(3) 		943.5
(2.8) 		617.4
(0.4) 		160.5
(-3) 		803

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 472.5
(0.4)
P 		607.6
(2.3)
P 		662.3
(3)
P 		384.1
(-0.8)
P 		291.7
(-2.1)
P 		224
(-3)
P 		438
B 510.9
(2.3)
P 		547.5
(3)
P 		459.9
(1.3)
P 		337.3
(-1.1)
P 		240.3
(-3)
P 		271.3
(-2.4)
P 		307
C 464.7
(1)
P 		556.6
(3)
P 		489.4
(1.5)
P 		336.8
(-1.9)
P 		287.1
(-3)
P 		303.6
(-2.6)
P 		270
avr 482.7
(1.3) 		570.6
(3) 		537.2
(2.3) 		352.7
(-1.3) 		273
(-2.9) 		266.3
(-3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 319.8
(3)
P 		185.1
(0.3)
P 		139.6
(-0.7)
P 		25.1
(-3)
P 		295
B 299.9
(3)
P 		229.8
(1.4)
P 		154.1
(-0.3)
P 		31.6
(-3)
P 		268
C 354.9
(3)
P 		301.2
(2)
P 		227.7
(0.7)
P 		27.3
(-3)
P 		328
avr 324.9
(3) 		238.7
(1.3) 		173.8
(-0.1) 		28
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 87.1
(-1.8)
P 		216.1
(3)
P 		144.2
(0.3)
P 		97.4
(-1.4)
P 		88
(-1.8)
P 		54.5
(-3)
P 		162
B 177.8
(2.7)
P 		182.2
(3)
P 		111.7
(-1.6)
P 		89.3
(-3)
P 		97.6
(-2.5)
P 		101.2
(-2.2)
P 		93
C 172.2
(3)
P 		169.8
(2.9)
P 		124.6
(0.3)
P 		67.7
(-3)
P 		92.9
(-1.6)
P 		101.6
(-1.1)
P 		105
avr 145.7
(0.5) 		189.4
(3) 		126.8
(-0.6) 		84.8
(-3) 		92.8
(-2.5) 		85.8
(-2.9) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11945
Sequence Type Exemplar sequence
Representative Public ID R13D7.2 NCBI
Target Description R13D7.2 /REP_DB=WormBase Gene ID /WP=CE18149 /GB=AAK72299.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028910 NCBI Caenorhabditis elegans R13D7.2 (R13D7.2) mRNA, complete cds. 11/11 None
SNAP00000007954 ENSEMBL cdna:SNAP chromosome:CEL140:V:7412501:7413787:1 11/11 None
R13D7.2a ENSEMBL cdna:known chromosome:CEL140:V:7412497:7413787:1 gene:R13D7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
R13D7.2b 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7412501-7413788(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13D7.2
Entrez Gene 179128 Entrez gene
SwissProt Q966G4 EMBL-EBI
WormBase CE18149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024081 R13D7.2 [Caenorhabditis elegans] gb|AAK72299.1| Hypothetical protein R13D7.2 [Caenorhabditis elegans] 0.0
blast AAA98574 Hypothetical protein C12D5.9 [Caenorhabditis elegans] ref|NP_504991.1| C12D5.9 [Caenorhabditis elegans] 1.0E-70
blast AAC69342 Hypothetical protein Y73C8C.4 [Caenorhabditis elegans] ref|NP_503848.2| Y73C8C.4 [Caenorhabditis elegans] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 4.0E-38
Sequence
Target Sequence 
>C. ELEGANS:176714_AT
gagagtcctgtattgtcgacatcgcagaagcagtttgcgttgaagagactgctttgacat
atctcaacacaaaatatgatcagttcgtggatatcatgagtattaaaccggactctgagc
actgtacttcactgcatgacgaattattctcgaggcaatgtgagccaatgattatgaaaa
gagaaaaggaccaagtgttggaacagatgaacggattattcagtattctccgatcgtcaa
aaaaaactgaagaagagaaacaacaagtgaaatgtgaagatattacggaatgcatgaaag
atgcttgctacaactctcatgactccataaacaaattcgaacaaagctgctccgacaagg
acaatgattcgttcgataaatgttatcgaaaactgttaacaagcccagaaagcattatgt
acaactgtccaaatgccaatagtaccaagaactcaactgtttcactattggacatgttga
gactaaaccgattttcggataataaagagtgcactagaactctaatggccaaaatctgca
ctcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTCCTGTATTGTCGACATCGC 259 395 464 Antisense
GACTGCTTTGACATATCTCAACACA 579 375 510 Antisense
GTATTAAACCGGACTCTGAGCACTG 469 443 563 Antisense
GAGCACTGTACTTCACTGCATGACG 215 389 580 Antisense
TATTCAGTATTCTCCGATCGTCAAA 569 661 680 Antisense
GAAAGATGCTTGCTACAACTCTCAT 163 361 759 Antisense
GCTACAACTCTCATGACTCCATAAA 83 303 770 Antisense
GAACAAAGCTGCTCCGACAAGGACA 57 353 802 Antisense
ATGTACAACTGTCCAAATGCCAATA 218 49 880 Antisense
GAACTCAACTGTTTCACTATTGGAC 510 349 912 Antisense
TAATGGCCAAAATCTGCACTCCTGA 136 635 986 Antisense
Sequence Source Affymetrix Proprietary Database