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[176713_s_at]

Description T18H9.7 /REP_DB=WormBase Gene ID /WP=CE19588 /GB=AAK71873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 20      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 698
1 2 3 4 range
A 700.4
(-0.4)
P 		623.4
(-1.1)
P 		403.8
(-3)
P 		1090.2
(3)
P 		686
B 687.4
(0.1)
P 		562.6
(-1.2)
P 		391.8
(-3)
P 		963.5
(3)
P 		572
C 703.2
(0.4)
P 		576
(-1.1)
P 		405.7
(-3)
P 		933.2
(3)
P 		528
avr 697
(-0) 		587.3
(-1.1) 		400.4
(-3) 		995.6
(3) 		595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 722.6
(3)
P 		644.5
(1.4)
P 		429.1
(-3)
P 		527.5
(-1)
P 		546.8
(-0.6)
P 		643.1
(1.4)
P 		294
B 626.1
(1.3)
P 		647.1
(2)
P 		496.3
(-3)
P 		544.8
(-1.4)
P 		496.5
(-3)
P 		675.6
(3)
P 		179
C 616.2
(1.3)
P 		661.1
(2.5)
P 		664
(2.5)
P 		610.8
(1.2)
P 		443.7
(-3)
P 		682.5
(3)
P 		239
avr 655
(2.6) 		650.9
(2.4) 		529.8
(-1.8) 		561
(-0.7) 		495.7
(-3) 		667.1
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 255
(3)
P 		135.3
(-1.8)
P 		105.6
(-3)
P 		159.6
(-0.8)
P 		149
B 219.2
(3)
P 		139
(-0.7)
P 		90.8
(-3)
P 		205.3
(2.4)
P 		128
C 232.8
(3)
P 		165.6
(-1.4)
P 		141.4
(-3)
P 		157.3
(-2)
P 		91
avr 235.7
(3) 		146.6
(-1.3) 		112.6
(-3) 		174.1
(-0) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 133.2
(-1.2)
P 		229.2
(3)
P 		93.4
(-3)
P 		133.8
(-1.2)
P 		165
(0.2)
P 		156.6
(-0.2)
P 		136
B 217.9
(1.4)
P 		215.4
(1.3)
P 		120.5
(-3)
P 		144.3
(-1.9)
P 		201.7
(0.7)
P 		251.9
(3)
P 		131
C 228.4
(3)
P 		201.7
(1.5)
P 		169
(-0.4)
P 		122.8
(-3)
P 		143.6
(-1.8)
P 		228.5
(3)
P 		106
avr 193.2
(1.5) 		215.4
(3) 		127.6
(-3) 		133.6
(-2.6) 		170.1
(-0.1) 		212.3
(2.8) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176713_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11656
Sequence Type Exemplar sequence
Representative Public ID T18H9.7 NCBI
Target Description T18H9.7 /REP_DB=WormBase Gene ID /WP=CE19588 /GB=AAK71873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072986(11), NM_072987(11), NM_182363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072986 NCBI Caenorhabditis elegans T18H9.7a (T18H9.7) mRNA, complete cds. 11/11 None
NM_072987 NCBI Caenorhabditis elegans T18H9.7b (T18H9.7) mRNA, complete cds. 11/11 None
NM_182363 NCBI Caenorhabditis elegans T18H9.7c (T18H9.7) mRNA, complete cds. 11/11 None
SNAP00000040415 ENSEMBL cdna:SNAP chromosome:CEL140:V:9216719:9219763:-1 11/11 None
GENEFINDER00000040417 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9216719:9219763:-1 11/11 None
T18H9.7a ENSEMBL cdna:known chromosome:CEL140:V:9216354:9219827:-1 gene:T18H9.7 11/11 A 
T18H9.7c ENSEMBL cdna:known chromosome:CEL140:V:9216719:9218600:-1 gene:T18H9.7 11/11 None
T18H9.7b ENSEMBL cdna:known chromosome:CEL140:V:9216719:9219763:-1 gene:T18H9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9216718-9219763(-) 100.0 100.0
Public Domain and Genome References
Ensembl T18H9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71873 Hypothetical protein T18H9.7a [Caenorhabditis elegans] ref|NP_505387.1| T18H9.7a [Caenorhabditis elegans] 0.0
blast NP_505388 T18H9.7b [Caenorhabditis elegans] 0.0
blast CAE72133 Hypothetical protein CBG19229 [Caenorhabditis briggsae] 0.0
blast AAO25991 Hypothetical protein T18H9.7c [Caenorhabditis elegans] ref|NP_872163.1| T18H9.7c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176713_S_AT
cgcacaaactgtaatttctccacgagaagagtcggttatatcgaaaactgatggatcgtc
tccacctcattctccacaacttcgaaacgtcgatggccaagaacttaatatggatttctg
gccgaataatcccgttccgcaatcatcacaatactcgtacggctctgatttccctccatc
atcttcgaatacaactccgaattctaaaaaagatacagccaaggtcacaattaaagctca
tttcaaaacactgcttgtgtcgagatctccaagttctggttcattgagtcttacctattt
aaaagaaaaaaggaaagacaaaatgctacaaaaactgggaatgaagaaaggacaaaagca
gaaaccagaggaaggagctgctccatctcaagtatcttctattggaagaatgctttgcag
tgctaccggaaagcacaatgaattgactgttatcatcgatggaaatgcttacaatggcat
cagatactttcaaacatctccacaatggcagacgcatatcaaatccttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCACAAACTGTAATTTCTCCACGA 400 253 1857 Antisense
CATTCTCCACAACTTCGAAACGTCG 442 215 1924 Antisense
GATTTCTGGCCGAATAATCCCGTTC 453 423 1969 Antisense
CGTTCCGCAATCATCACAATACTCG 521 247 1989 Antisense
ACAATACTCGTACGGCTCTGATTTC 171 113 2004 Antisense
TTCCCTCCATCATCTTCGAATACAA 147 699 2026 Antisense
GTCGAGATCTCCAAGTTCTGGTTCA 679 473 2115 Antisense
GAAGGAGCTGCTCCATCTCAAGTAT 354 333 2227 Antisense
GAATGCTTTGCAGTGCTACCGGAAA 607 329 2264 Antisense
AAACATCTCCACAATGGCAGACGCA 373 129 2348 Antisense
GGCAGACGCATATCAAATCCTTCCC 147 537 2363 Antisense
Sequence Source Affymetrix Proprietary Database