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[176712_at]

Description K06H7.8 /REP_DB=WormBase Gene ID /WP=CE25045 /GB=AAF99989.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 28.7
(-1.7)
A 		15.4
(-3)
A 		75.4
(3)
A 		70.5
(2.5)
A 		60
B 45.7
(-2.9)
A 		44.8
(-3)
A 		50.3
(-2.3)
A 		91.8
(3)
A 		47
C 13
(-3)
A 		26.4
(-1.3)
A 		39.1
(0.3)
A 		59.9
(3)
M 		47
avr 29.1
(-3) 		28.9
(-3) 		54.9
(0.5) 		74.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 20.2
(-2.4)
A 		34.7
(-1.4)
A 		12.8
(-3)
A 		39.9
(-1)
A 		60.8
(0.6)
A 		93.3
(3)
P 		81
B 16.8
(-3)
A 		40.6
(-0.2)
A 		27.6
(-1.7)
A 		67.8
(3)
A 		45.2
(0.3)
M 		47.4
(0.6)
P 		51
C 18.6
(-3)
A 		23.7
(-2.6)
A 		21.6
(-2.8)
A 		19.3
(-2.9)
A 		68.9
(0.7)
P 		99.5
(3)
P 		81
avr 18.5
(-3) 		33
(-1.6) 		20.7
(-2.8) 		42.3
(-0.7) 		58.3
(0.9) 		80.1
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.4
(-0.4)
A 		3.3
(-3)
A 		19.7
(3)
A 		10.3
(-0.4)
A 		16
B 14.6
(-0.5)
A 		11.1
(-3)
A 		11.6
(-2.6)
A 		19.6
(3)
A 		9
C 4.3
(-3)
A 		7.6
(-0.9)
A 		13.6
(3)
A 		10.1
(0.7)
M 		9
avr 9.8
(-1.1) 		7.3
(-3) 		15
(3) 		13.3
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.7
(-2.7)
A 		12.3
(-0.1)
A 		2.8
(-3)
A 		10.1
(-0.8)
A 		18.3
(1.7)
A 		22.7
(3)
P 		20
B 5.9
(-3)
A 		13.5
(0.6)
A 		6.7
(-2.6)
A 		17.9
(2.8)
A 		18.4
(3)
M 		17.7
(2.7)
P 		13
C 6.9
(-2.4)
A 		7.2
(-2.3)
A 		5.5
(-2.7)
A 		3.9
(-3)
A 		22.3
(0.8)
P 		33.3
(3)
P 		29
avr 5.5
(-2.8) 		11
(-1.2) 		5
(-3) 		10.6
(-1.3) 		19.7
(1.5) 		24.6
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7256
Sequence Type Exemplar sequence
Representative Public ID K06H7.8 NCBI
Target Description K06H7.8 /REP_DB=WormBase Gene ID /WP=CE25045 /GB=AAF99989.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066367 NCBI Caenorhabditis elegans K06H7.8 (K06H7.8) mRNA, complete cds. 11/11 None
SNAP00000036735 ENSEMBL cdna:SNAP chromosome:CEL140:III:8096657:8098073:-1 11/11 None
GENEFINDER00000036740 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8096657:8098073:-1 11/11 None
K06H7.8 ENSEMBL cdna:known chromosome:CEL140:III:8096657:8098073:-1 gene:K06H7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8096654-8098071(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H7.8
Entrez Gene 187079 Entrez gene
SwissProt P34516 EMBL-EBI
WormBase CE25045 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99989 Hypothetical protein K06H7.8 [Caenorhabditis elegans] ref|NP_498768.1| K06H7.8 [Caenorhabditis elegans] sp|P34516|YMX8_CAEEL Putative serine/threonine-protein kinase K06H7.1 0.0
blast CAB03982 Hypothetical protein C53A5.4 [Caenorhabditis elegans] ref|NP_506600.1| C53A5.4 [Caenorhabditis elegans] 1.0E-150
blast CAE72547 Hypothetical protein CBG19731 [Caenorhabditis briggsae] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-15
Sequence
Target Sequence 
>C. ELEGANS:176712_AT
aatgggttgtaagggctcagctgacgagagatattttctcgtgcttgatttcggattggc
ccgtcaatacattgccgacgaagacgatggattgaagatgcgtcgtccacgtgagaaaac
atatttccgtggaaccgcccgttattgctcagtggcgatgcatgaccgttatgagcaagg
aagagttgatgacttgtgggctttggtgtacattttggcggagatgagatgtcgattggc
atggcatgatgttgatgataaggtggaaatcggtgaaatgaagcgaaaaatccacgacga
ggttctcttcgcaaagagccccgttcaaatgctgagctttgtgaaaactgttcgttccac
tctgttctatcatcgtccagactatgagaagctattcaaattgcttgaagatgtcatgaa
atgtgccaattataaatggtccgacccatatcattgggagccagagaagaagaaaaatcc
agcatctcaagggaacaagtttggattgggaaagaaaggaacaaaagaatctggagagct
cccagaagcttctttctttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGGTTGTAAGGGCTCAGCTGAC 254 163 456 Antisense
GATATTTTCTCGTGCTTGATTTCGG 660 425 485 Antisense
TTGGCCCGTCAATACATTGCCGACG 437 667 511 Antisense
TGAAGATGCGTCGTCCACGTGAGAA 388 575 548 Antisense
AACCGCCCGTTATTGCTCAGTGGCG 60 145 588 Antisense
GTGGCGATGCATGACCGTTATGAGC 114 491 607 Antisense
AAAATCCACGACGAGGTTCTCTTCG 610 131 742 Antisense
AGAGCCCCGTTCAAATGCTGAGCTT 629 69 770 Antisense
GTGAAAACTGTTCGTTCCACTCTGT 182 463 796 Antisense
CACTCTGTTCTATCATCGTCCAGAC 27 197 813 Antisense
AGCTCCCAGAAGCTTCTTTCTTTAC 307 81 992 Antisense
Sequence Source Affymetrix Proprietary Database