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[176711_at]

Description Y66A7A.7 /REP_DB=WormBase Gene ID /WP=CE20344 /GB=CAC35861.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 91      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 71      6grp_total > 83      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 196.2
(-3)
P 		379.8
(2.1)
P 		410.7
(3)
P 		282.4
(-0.6)
P 		215
B 209.6
(-3)
P 		424.6
(2.9)
P 		430.1
(3)
P 		267.9
(-1.4)
P 		221
C 284
(-1.9)
P 		558.7
(3)
P 		420.8
(0.5)
P 		221.9
(-3)
P 		337
avr 229.9
(-3) 		454.4
(3) 		420.5
(2.1) 		257.4
(-2.3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 303.1
(-2.2)
P 		336.8
(-0.5)
P 		402.2
(3)
P 		322.9
(-1.2)
P 		321.9
(-1.3)
P 		288.9
(-3)
P 		113
B 223.4
(-3)
P 		229.6
(-2.8)
P 		392.9
(3)
P 		275.3
(-1.2)
P 		357.9
(1.8)
P 		232.8
(-2.7)
P 		170
C 283.5
(-3)
P 		322.7
(-1.5)
P 		300.9
(-2.3)
P 		289.9
(-2.8)
P 		438.7
(3)
P 		328.2
(-1.3)
P 		155
avr 270
(-3) 		296.4
(-1.5) 		365.3
(2.6) 		296
(-1.5) 		372.8
(3) 		283.3
(-2.2) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 71.4
(-0.3)
P 		82.4
(0.7)
P 		107.4
(3)
P 		41.3
(-3)
P 		66
B 66.8
(-1.8)
P 		104.9
(3)
P 		99.7
(2.3)
P 		57.1
(-3)
P 		48
C 94
(-0.2)
P 		160.6
(3)
P 		146.7
(2.3)
P 		37.4
(-3)
P 		123
avr 77.4
(-0.3) 		116
(2.8) 		117.9
(3) 		45.3
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 55.9
(-3)
P 		119.8
(3)
P 		87.6
(-0)
P 		81.9
(-0.6)
P 		97.1
(0.9)
P 		70.3
(-1.6)
P 		64
B 77.7
(-2.6)
P 		76.4
(-2.7)
P 		95.4
(-1.1)
P 		72.9
(-3)
P 		145.4
(3)
P 		86.8
(-1.8)
P 		73
C 105.1
(0.4)
P 		98.5
(-0.1)
P 		76.6
(-1.7)
P 		58.3
(-3)
P 		142
(3)
P 		109.9
(0.7)
P 		84
avr 79.6
(-2.1) 		98.2
(-0.1) 		86.5
(-1.4) 		71
(-3) 		128.2
(3) 		89
(-1.1) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6836
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.7 NCBI
Target Description Y66A7A.7 /REP_DB=WormBase Gene ID /WP=CE20344 /GB=CAC35861.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067104 NCBI Caenorhabditis elegans Y66A7A.7 (Y66A7A.7) mRNA, complete cds. 11/11 None
Y66A7A.7 ENSEMBL cdna:known chromosome:CEL140:III:11628262:11630890:-1 gene:Y66A7A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036267 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11628257-11630886(-) 88.42 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66A7A.7
Entrez Gene 190492 Entrez gene
SwissProt Q9XWY4 EMBL-EBI
WormBase CE20344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35861 Hypothetical protein Y66A7A.7 [Caenorhabditis elegans] ref|NP_499505.1| Y66A7A.7 [Caenorhabditis elegans] emb|CAA21501.1| Y66A7A.7 [Caenorhabditis elegans] 4.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499505.1 1 62-84
Y66A7A.7 1 62-84
Sequence
Target Sequence 
>C. ELEGANS:176711_AT
gactagggctgctccaatttgggtcccgccacgaaatctgaagggtactgtaagtccaaa
aaactacagtaccccatatttttgtaggtgttccaactgccgaaaaatgtctttggacgc
gacactcgagaacatcaatgacacgttacaacaggtggcaagcctcctgaaagccgttga
agttgccgtttttattttggcaattgccgttgggatcgcattaattggctgtaccgccgg
cttcttctatggcaaatacaatcaacgataccagtataaagagctgagcagcgggagccc
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTAGGGCTGCTCCAATTTGGGTC 576 325 15 Antisense
GGTCCCGCCACGAAATCTGAAGGGT 439 501 36 Antisense
ACAGTACCCCATATTTTTGTAGGTG 11 59 80 Antisense
TTTGTAGGTGTTCCAACTGCCGAAA 371 665 95 Antisense
GTCTTTGGACGCGACACTCGAGAAC 579 467 123 Antisense
CGTTACAACAGGTGGCAAGCCTCCT 186 247 158 Antisense
AAGCCTCCTGAAAGCCGTTGAAGTT 660 143 174 Antisense
TGGCAATTGCCGTTGGGATCGCATT 172 547 212 Antisense
GGATCGCATTAATTGGCTGTACCGC 142 513 227 Antisense
CGCCGGCTTCTTCTATGGCAAATAC 238 257 249 Antisense
AAAGAGCTGAGCAGCGGGAGCCCCA 625 121 292 Antisense
Sequence Source Affymetrix Proprietary Database