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[176710_at]

Description B0361.2 /REP_DB=WormBase Gene ID /WP=CE26791 /GB=AAK18872.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 90      6grp_total > 77      4grp_total > 23      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 128.1
(3)
P 		112.1
(0.1)
P 		94.5
(-3)
P 		110.2
(-0.2)
P 		34
B 128.8
(3)
P 		99.7
(-3)
P 		121.2
(1.4)
P 		112.1
(-0.4)
P 		29
C 139.8
(2.9)
P 		84.7
(-3)
P 		87.8
(-2.7)
P 		140.3
(3)
P 		56
avr 132.2
(3) 		98.8
(-3) 		101.2
(-2.6) 		120.9
(1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 133.2
(-0.5)
P 		119.8
(-3)
P 		132.6
(-0.6)
P 		152.4
(3)
P 		129.7
(-1.2)
P 		131.7
(-0.8)
P 		33
B 101
(-2)
P 		122.5
(-0.9)
P 		142.8
(0.2)
P 		83.3
(-3)
P 		137.2
(-0.1)
P 		194.2
(3)
P 		111
C 106
(-2.8)
P 		139.6
(-0.5)
P 		103.1
(-3)
P 		117.1
(-2)
P 		116.3
(-2.1)
P 		189.9
(3)
P 		87
avr 113.4
(-3) 		127.3
(-1.6) 		126.2
(-1.7) 		117.6
(-2.6) 		127.7
(-1.5) 		171.9
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 46.6
(3)
P 		24.3
(-1.4)
P 		24.7
(-1.3)
P 		16.1
(-3)
P 		31
B 41.1
(3)
P 		24.6
(-2.8)
P 		28.1
(-1.5)
P 		23.9
(-3)
P 		17
C 46.3
(3)
P 		24.4
(-2.8)
P 		30.6
(-1.2)
P 		23.7
(-3)
P 		23
avr 44.7
(3) 		24.4
(-2.2) 		27.8
(-1.3) 		21.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 24.6
(-3)
P 		42.6
(3)
P 		28.9
(-1.6)
P 		38.6
(1.7)
P 		39.1
(1.8)
P 		32.1
(-0.5)
P 		18
B 35.1
(-1.4)
P 		40.8
(-0.8)
P 		34.7
(-1.5)
P 		22.1
(-3)
P 		55.7
(1)
P 		72.4
(3)
P 		50
C 39.3
(-0.6)
P 		42.6
(-0.2)
P 		26.3
(-2.6)
P 		23.6
(-3)
P 		37.6
(-0.9)
P 		63.6
(3)
P 		40
avr 33
(-1.9) 		42
(-0) 		30
(-2.6) 		28.1
(-3) 		44.1
(0.4) 		56
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6633
Sequence Type Exemplar sequence
Representative Public ID B0361.2 NCBI
Target Description B0361.2 /REP_DB=WormBase Gene ID /WP=CE26791 /GB=AAK18872.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025954 NCBI Caenorhabditis elegans B0361.2a (B0361.2) mRNA, complete cds. 11/11 None
SNAP00000011053 ENSEMBL cdna:SNAP chromosome:CEL140:III:7293558:7295242:1 11/11 None
GENEFINDER00000011066 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7293558:7294864:1 11/11 None
B0361.2 ENSEMBL cdna:known chromosome:CEL140:III:7293558:7308281:1 gene:B0361.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176034 2 1 NM_001025954 176710_at (11), 187739_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7293171-7294921(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0361.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18872 Hypothetical protein B0361.2a [Caenorhabditis elegans] ref|NP_001021125.1| B0361.2a [Caenorhabditis elegans] sp|Q10946|YMP2_CAEEL Hypothetical protein B0361.2 in chromosome III 0.0
blast CAE69294 Hypothetical protein CBG15349 [Caenorhabditis briggsae] 0.0
blast AAK18872 Hypothetical protein B0361.2a [Caenorhabditis elegans] ref|NP_001021125.1| B0361.2a [Caenorhabditis elegans] sp|Q10946|YMP2_CAEEL Hypothetical protein B0361.2 in chromosome III 1.0E-108
blast CAE69294 Hypothetical protein CBG15349 [Caenorhabditis briggsae] 2.0E-92
blast XP_536589 PREDICTED: similar to CWF19-like 2, cell cycle control [Canis familiaris] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 3.6E-23
Pfam IPR006768 EMBL-EBI Protein similar to CwfJ, C-terminal 1 8.4E-72
Sequence
Target Sequence 
>C. ELEGANS:176710_AT
agatttttacggcagtcaacaagttagaaatgatgttatgaagtcatcagattctggagg
agctccacttactgaagatgaaaagaacaaattgtcagcgaaaatattaaaagcagaaat
gaaaggagatacggatctcgtcaaaaaattgaaaagaaaactcgaatccggaatttctgg
cgacgacgaaccacccaaatcaaaatcaaaagaagtaacaatgatgagaagggaccggga
aggaaatatcttgccagcaagtagtagaagatccgattctgacagacatggagagggctc
ttcaagaatgcgacgcgaatatgaaaaatcacaagatttagattcgatggtcagagagga
gaagacaggaacagctggagatcaactccgtctttttgaacgttcattaattaaaagctc
caaaatccgccgtcatgatgatgaaagcgtggacgatattgctgaaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTTTTACGGCAGTCAACAAGTT 97 1 216 Antisense
TGGAGGAGCTCCACTTACTGAAGAT 34 551 270 Antisense
AACTCGAATCCGGAATTTCTGGCGA 513 139 374 Antisense
GAATTTCTGGCGACGACGAACCACC 475 325 386 Antisense
GGGAAGGAAATATCTTGCCAGCAAG 683 493 452 Antisense
AGAAGATCCGATTCTGACAGACATG 256 75 481 Antisense
GGAGAGGGCTCTTCAAGAATGCGAC 270 519 505 Antisense
GGAACAGCTGGAGATCAACTCCGTC 648 527 583 Antisense
CAACTCCGTCTTTTTGAACGTTCAT 317 185 598 Antisense
TTAAAAGCTCCAAAATCCGCCGTCA 91 683 626 Antisense
GCGTGGACGATATTGCTGAAATGCA 300 293 662 Antisense
Sequence Source Affymetrix Proprietary Database