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[176709_at]

Description F59G1.8 /REP_DB=WormBase Gene ID /WP=CE26373 /GB=AAK31534.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 89      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 133.5
(-2.3)
A 		194.9
(3)
P 		171.3
(0.9)
P 		126
(-3)
M 		69
B 122
(-3)
A 		244.3
(3)
P 		146.3
(-1.8)
P 		195.5
(0.6)
P 		122
C 136.5
(-3)
P 		320.3
(3)
A 		219
(-0.3)
P 		249.3
(0.7)
P 		184
avr 130.7
(-3) 		253.2
(3) 		178.9
(-0.6) 		190.3
(-0.1) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 100.4
(-3)
A 		113.4
(-2)
A 		103.5
(-2.8)
P 		131.6
(-0.5)
P 		176.5
(3)
P 		176.7
(3)
P 		76
B 86
(-3)
A 		124
(-1.5)
A 		108.5
(-2.1)
M 		121.7
(-1.5)
P 		144.2
(-0.6)
P 		233.6
(3)
P 		148
C 101.1
(-1.1)
A 		155.5
(0.6)
P 		131.2
(-0.2)
A 		42
(-3)
A 		193.1
(1.8)
P 		231.2
(3)
P 		189
avr 95.8
(-3) 		131
(-1.2) 		114.4
(-2.1) 		98.4
(-2.9) 		171.3
(0.8) 		213.8
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 48.6
(3)
A 		42.3
(1.7)
P 		44.8
(2.2)
P 		18.4
(-3)
M 		30
B 38.9
(-1.9)
A 		60.3
(3)
P 		33.9
(-3)
P 		41.7
(-1.2)
P 		26
C 45.2
(-2.6)
P 		92.1
(3)
A 		76.3
(1.1)
P 		42
(-3)
P 		50
avr 44.2
(-1) 		64.9
(3) 		51.7
(0.4) 		34
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 18.5
(-3)
A 		40.3
(0.8)
A 		22.5
(-2.3)
P 		33.4
(-0.4)
P 		53.3
(3)
P 		43
(1.2)
P 		35
B 29.9
(-2.6)
A 		41.3
(-1.5)
A 		26.3
(-3)
M 		32.2
(-2.4)
P 		58.6
(0.2)
P 		87.1
(3)
P 		61
C 37.5
(-0.5)
A 		47.4
(0.4)
P 		33.4
(-0.8)
A 		8.4
(-3)
A 		62.5
(1.7)
P 		77.4
(3)
P 		69
avr 28.6
(-2.5) 		43
(-0.5) 		27.4
(-2.6) 		24.7
(-3) 		58.1
(1.5) 		69.2
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5487
Sequence Type Exemplar sequence
Representative Public ID F59G1.8 NCBI
Target Description F59G1.8 /REP_DB=WormBase Gene ID /WP=CE26373 /GB=AAK31534.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062778 NCBI Caenorhabditis elegans F59G1.8 (F59G1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000033459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5906603:5907394:1 9/11 None
F59G1.8 ENSEMBL cdna:known chromosome:CEL140:II:5906603:5907506:1 gene:F59G1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033450 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5906599-5907503(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59G1.8
Entrez Gene 186638 Entrez gene
SwissProt Q9BI84 EMBL-EBI
WormBase CE26373 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31534 Hypothetical protein F59G1.8 [Caenorhabditis elegans] ref|NP_495179.1| F59G1.8 [Caenorhabditis elegans] 1.0E-108
blast T34314 hypothetical protein F59G1.3 - Caenorhabditis elegans 1.0E-106
blast AAK31534 Hypothetical protein F59G1.8 [Caenorhabditis elegans] ref|NP_495179.1| F59G1.8 [Caenorhabditis elegans] 2.0E-79
blast T34314 hypothetical protein F59G1.3 - Caenorhabditis elegans 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:176709_AT
agctgagagctggtggaatcgtacagatacccgccaaaaatgggatgagccccccagaaa
agcagaagtaaacgtagatcgttgtgaaaacttgccaagtgttcagacaaggacagaaag
aattgatgaatcgagaaaagaagacgaatattgtgaagtggtcgtttcaaccaaaaagac
atattattctcgaagaaatggtatgaaacccggaactctgaaaaatttgcgctgctacta
tcaatccgccggaattccgctccagttatatgtcaactgcagtcctggcaatgagagtga
agtcatcgaaactaggattaccgaaacgaaacagattggcgatggacaatacgaagttcg
aatagagtctaggtacaagttcctgaaaactgcgaaaattctgaaagcgcggaatagaag
gcaattgtcttcaatcattttatcggatgctcatgaaacgaaattttcaaccatagcaca
ttcctcattgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGAGAGCTGGTGGAATCGTACA 183 79 63 Antisense
GAATCGTACAGATACCCGCCAAAAA 474 329 78 Antisense
TGAGCCCCCCAGAAAAGCAGAAGTA 295 565 108 Antisense
GATCGTTGTGAAAACTTGCCAAGTG 201 417 139 Antisense
TGGTATGAAACCCGGAACTCTGAAA 432 541 261 Antisense
AATTTGCGCTGCTACTATCAATCCG 140 175 286 Antisense
CTATCAATCCGCCGGAATTCCGCTC 166 225 300 Antisense
GAATTCCGCTCCAGTTATATGTCAA 130 325 314 Antisense
ATATGTCAACTGCAGTCCTGGCAAT 679 17 330 Antisense
AACGAAATTTTCAACCATAGCACAT 278 145 519 Antisense
ACCATAGCACATTCCTCATTGTTCC 59 87 532 Antisense
Sequence Source Affymetrix Proprietary Database