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[176708_at]

Description F16H6.10 /REP_DB=WormBase Gene ID /WP=CE27753 /GB=CAC42371.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 66      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 57      4grp_total > 04      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 254.6
(0.2)
P 		185.7
(-3)
P 		206.1
(-2.1)
P 		316.9
(3)
P 		131
B 217.5
(-1.2)
P 		172.9
(-2.4)
P 		151.1
(-3)
P 		370.6
(3)
P 		220
C 268.2
(-1.1)
P 		203.2
(-3)
P 		242.1
(-1.8)
P 		403.5
(3)
P 		200
avr 246.8
(-1) 		187.3
(-3) 		199.8
(-2.6) 		363.7
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 208.3
(0)
P 		174.2
(-2.9)
P 		243.6
(3)
P 		239.4
(2.6)
P 		192.4
(-1.4)
P 		173
(-3)
P 		71
B 275.6
(2.8)
P 		206.9
(-2.7)
P 		225.7
(-1.2)
P 		226.2
(-1.2)
P 		203.6
(-3)
P 		278
(3)
P 		74
C 200.4
(-0.3)
P 		208.2
(0.3)
P 		164.1
(-3)
P 		235.2
(2.3)
P 		177.5
(-2)
P 		244.6
(3)
P 		81
avr 228.1
(2.2) 		196.4
(-2.3) 		211.1
(-0.2) 		233.6
(3) 		191.2
(-3) 		231.9
(2.8) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 92.7
(3)
P 		40.3
(-3)
P 		53.9
(-1.4)
P 		46.4
(-2.3)
P 		52
B 69.4
(1.7)
P 		42.7
(-2)
P 		35
(-3)
P 		79
(3)
P 		44
C 88.8
(3)
P 		58.4
(-3)
P 		84.4
(2.1)
P 		68
(-1.1)
P 		30
avr 83.6
(3) 		47.1
(-3) 		57.8
(-1.2) 		64.5
(-0.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 38.4
(-3)
P 		62
(3)
P 		53
(0.7)
P 		60.7
(2.7)
P 		58.1
(2)
P 		42.1
(-2.1)
P 		24
B 95.9
(2)
P 		68.9
(-1.3)
P 		54.8
(-3)
P 		59.9
(-2.4)
P 		82.7
(0.4)
P 		103.7
(3)
P 		49
C 74.3
(1.9)
P 		63.5
(0.2)
P 		41.8
(-3)
P 		47.3
(-2.2)
P 		57.4
(-0.7)
P 		81.9
(3)
P 		40
avr 69.5
(1.5) 		64.8
(0.4) 		49.9
(-3) 		56
(-1.6) 		66.1
(0.7) 		75.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176708_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13957
Sequence Type Exemplar sequence
Representative Public ID F16H6.10 NCBI
Target Description F16H6.10 /REP_DB=WormBase Gene ID /WP=CE27753 /GB=CAC42371.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075164 NCBI Caenorhabditis elegans F16H6.10 (F16H6.10) mRNA, complete cds. 11/11 None
F16H6.10 ENSEMBL cdna:known chromosome:CEL140:V:18225372:18227021:-1 gene:F16H6.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18225476-18226572(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H6.10
Entrez Gene 180190 Entrez gene
SwissProt Q9XV96 EMBL-EBI
WormBase CE27753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04123 Hypothetical protein F16H6.10 [Caenorhabditis elegans] emb|CAC42371.1| Hypothetical protein F16H6.10 [Caenorhabditis elegans] ref|NP_507565.1| F16H6.10 [Caenorhabditis elegans] 1.0E-150
blast CAD54151 Hypothetical protein R10E8.8 [Caenorhabditis elegans] ref|NP_872158.1| R10E8.8 [Caenorhabditis elegans] 7.0E-33
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:176708_AT
atgccaaacgcactttcggtagtggtcagctgtcgttctgatatattcaagacattaaaa
ttgaatgcaatgaatgatcatgacaagtgtgtatttgaaaaaacattacccatcgataat
tcattacaaaatgtttatgctgatgatcaacttgtaatgctggaaaatttagtgaatggt
gaacttcacgatttttatggcacgacgaaattattcacatatattctggcgttctccgat
gaatatccaattgacaaaagcttaatacaggaaagttttgaagtcacagactcgtcactc
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAACGCACTTTCGGTAGTGG 164 41 13 Antisense
ACTTTCGGTAGTGGTCAGCTGTCGT 214 103 24 Antisense
GTAGTGGTCAGCTGTCGTTCTGATA 707 455 31 Antisense
GCTGTCGTTCTGATATATTCAAGAC 664 295 41 Antisense
AAACATTACCCATCGATAATTCATT 509 125 113 Antisense
GTGAATGGTGAACTTCACGATTTTT 269 481 184 Antisense
TCACGATTTTTATGGCACGACGAAA 357 625 198 Antisense
GGCACGACGAAATTATTCACATATA 466 535 211 Antisense
TTCACATATATTCTGGCGTTCTCCG 451 685 226 Antisense
GGCGTTCTCCGATGAATATCCAATT 563 541 240 Antisense
TGAAGTCACAGACTCGTCACTCGGA 478 575 291 Antisense
Sequence Source Affymetrix Proprietary Database