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[176707_at]

Description Y66A7A.1 /REP_DB=WormBase Gene ID /WP=CE19251 /GB=CAC35865.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.8
(-3)
A 		21.6
(3)
A 		12.8
(-0.6)
A 		12.5
(-0.7)
A 		15
B 5
(-1.5)
A 		11.7
(3)
A 		8.4
(0.8)
A 		2.7
(-3)
A 		9
C 9.6
(1.3)
A 		11.8
(3)
A 		5
(-2.4)
A 		4.2
(-3)
A 		8
avr 7.1
(-2.6) 		15
(3) 		8.7
(-1.4) 		6.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 12.5
(3)
A 		8.5
(-1.4)
A 		8.2
(-1.8)
A 		7.1
(-3)
A 		11
(1.3)
A 		7.9
(-2.1)
A 		5
B 9.9
(-1.5)
A 		5
(-2.4)
A 		7.8
(-1.9)
A 		32.9
(3)
A 		8
(-1.9)
A 		2.1
(-3)
A 		31
C 7.5
(-2.4)
A 		5.3
(-2.6)
A 		51.2
(3)
A 		4.1
(-2.8)
A 		2.4
(-3)
A 		4.3
(-2.8)
A 		49
avr 10
(-1.2) 		6.3
(-2.5) 		22.4
(3) 		14.7
(0.4) 		7.1
(-2.2) 		4.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.5
(-1.6)
A 		4.7
(3)
A 		3.3
(0.1)
A 		1.8
(-3)
A 		3
B 1.6
(-0.4)
A 		2.9
(3)
A 		2
(0.7)
A 		0.6
(-3)
A 		2
C 3.2
(2.6)
A 		3.4
(3)
A 		1.8
(-0.6)
A 		0.7
(-3)
A 		3
avr 2.4
(0.1) 		3.7
(3) 		2.4
(0.1) 		1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-1)
A 		3
(1.8)
A 		1.8
(-3)
A 		1.8
(-3)
A 		3.3
(3)
A 		1.9
(-2.6)
A 		2
B 3.5
(-0.9)
A 		1.6
(-2.4)
A 		1.9
(-2.2)
A 		8.7
(3)
A 		3.2
(-1.2)
A 		0.8
(-3)
A 		8
C 2.8
(-2)
A 		1.6
(-2.6)
A 		13
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		12
avr 2.9
(-0.9) 		2.1
(-2) 		5.6
(3) 		3.8
(0.4) 		2.4
(-1.6) 		1.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6100
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.1 NCBI
Target Description Y66A7A.1 /REP_DB=WormBase Gene ID /WP=CE19251 /GB=CAC35865.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067075 NCBI Caenorhabditis elegans Y66A7A.1 (Y66A7A.1) mRNA, complete cds. 11/11 None
SNAP00000011506 ENSEMBL cdna:SNAP chromosome:CEL140:III:11482479:11487221:-1 11/11 None
GENEFINDER00000011516 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11482479:11484258:-1 11/11 None
Y66A7A.1 ENSEMBL cdna:known chromosome:CEL140:III:11482479:11484258:-1 gene:Y66A7A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11482474-11484254(-) 98.02 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66A7A.1
Entrez Gene 190489 Entrez gene
SwissProt Q9XWY7 EMBL-EBI
WormBase CE19251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35865 Hypothetical protein Y66A7A.1 [Caenorhabditis elegans] ref|NP_499476.1| Y66A7A.1 [Caenorhabditis elegans] emb|CAA21497.1| Y66A7A.1 [Caenorhabditis elegans] 0.0
blast CAA83594 Hypothetical protein C05B5.6 [Caenorhabditis elegans] ref|NP_499220.2| C05B5.6 [Caenorhabditis elegans] sp|P34294|YKO6_CAEEL Hypothetical protein C05B5.6 in chromosome III 1.0E-77
blast CAA83594 Hypothetical protein C05B5.6 [Caenorhabditis elegans] ref|NP_499220.2| C05B5.6 [Caenorhabditis elegans] sp|P34294|YKO6_CAEEL Hypothetical protein C05B5.6 in chromosome III 2.0E-77
blast CAC35866 Hypothetical protein Y66A7A.2 [Caenorhabditis elegans] ref|NP_499477.1| Y66A7A.2 [Caenorhabditis elegans] emb|CAA21502.1| Y66A7A.2 [Caenorhabditis elegans] 3.0E-65
blast CAB07161 Hypothetical protein C06H5.1 [Caenorhabditis elegans] ref|NP_741646.1| C06H5.1 [Caenorhabditis elegans] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.5E-29
Pfam IPR002759 EMBL-EBI Ribonuclease P-related protein 2.0E-43
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.5E-29
Sequence
Target Sequence 
>C. ELEGANS:176707_AT
agcccgttggaagtcgcgatgaataccttatcgtcacatttgcaaggacgggaattggct
ctcgatgcttttaaagtctccatagctggtggtcaagagaaatcgttcgaagcgctccaa
tctattcttcaattgaatgggagcatgtcggcgaaatatatgtcgatatcaggtttcatc
actgccgaccaaacagccaaagttttgaaaaacttcaagccaggcgctctggagaaaata
ctaattgaaatttctgtatctcctgacgcttcaattcaaaacattgtttgtatggatcaa
tggacacaagcgacaactctcatctgcggcgctcacatactttccacgttcgtcaagcat
ctcacttactttaaattaatggacgtcaacttttgcaagacatctttatcgaaaaaagat
attatgcagttccaaaagaatgttctcgccaaatcggagaaacttgaatactgtacattc
gacgaagttcgttataatagaagccagttcatgattgcattcaatggtcccaaatccgag
acatcttctgactcattcacctatcatgcaaacaactcttcgttcaacatttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCCGTTGGAAGTCGCGATGAATA 680 81 547 Antisense
GAATACCTTATCGTCACATTTGCAA 666 325 567 Antisense
AGGACGGGAATTGGCTCTCGATGCT 205 55 591 Antisense
AAGCGCTCCAATCTATTCTTCAATT 680 149 656 Antisense
TGAAATTTCTGTATCTCCTGACGCT 165 573 792 Antisense
ATGGACACAAGCGACAACTCTCATC 660 51 846 Antisense
CACATACTTTCCACGTTCGTCAAGC 212 193 880 Antisense
TCGTCAAGCATCTCACTTACTTTAA 651 601 896 Antisense
GGTCCCAAATCCGAGACATCTTCTG 118 501 1072 Antisense
TTCTGACTCATTCACCTATCATGCA 207 693 1092 Antisense
AACAACTCTTCGTTCAACATTTACT 517 135 1117 Antisense
Sequence Source Affymetrix Proprietary Database