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[176706_at] 7TM chemoreceptor, srx family

Description R13D7.4 /REP_DB=WormBase Gene ID /WP=CE18151 /GB=AAK72301.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 01      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 32.5
(-1.7)
A 		4.8
(-3)
A 		38.5
(-1.4)
A 		134.4
(3)
A 		130
B 33.2
(-3)
A 		50.3
(-0.9)
A 		45.8
(-1.5)
A 		82.8
(3)
A 		50
C 46
(-2)
A 		27.5
(-2.8)
A 		23.2
(-3)
A 		164.7
(3)
P 		142
avr 37.2
(-2.4) 		27.5
(-3) 		35.8
(-2.5) 		127.3
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.2
(-3)
A 		6.7
(-2.3)
A 		17.7
(-0.2)
A 		5.1
(-2.6)
A 		20.7
(0.4)
A 		34
(3)
A 		31
B 20.3
(-1.5)
A 		33.7
(1.3)
A 		23.7
(-0.8)
A 		12.7
(-3)
A 		37.2
(2)
A 		42.3
(3)
A 		30
C 5.2
(-3)
A 		7.2
(-2.7)
A 		9.7
(-2.3)
A 		10
(-2.3)
A 		46.4
(3)
A 		23.2
(-0.4)
A 		41
avr 9.6
(-2.9) 		15.9
(-1.4) 		17
(-1.2) 		9.3
(-3) 		34.8
(3) 		33.2
(2.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 11.8
(0.5)
A 		1
(-3)
A 		10.1
(-0.1)
A 		19.7
(3)
A 		19
B 10.6
(-3)
A 		12.4
(-1.5)
A 		10.6
(-3)
A 		17.7
(3)
A 		7
C 15.2
(-0.8)
A 		7.9
(-3)
A 		8.1
(-2.9)
A 		27.8
(3)
P 		20
avr 12.5
(-0.8) 		7.1
(-3) 		9.6
(-2) 		21.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.4
(-1.6)
A 		3.9
(-0.4)
A 		1.3
(-2.5)
A 		6.2
(1.4)
A 		8.3
(3)
A 		8
B 7.1
(-1.2)
A 		11.2
(0.8)
A 		5.8
(-1.8)
A 		3.4
(-3)
A 		15.1
(2.7)
A 		15.8
(3)
A 		12
C 1.9
(-3)
A 		2.2
(-2.9)
A 		2.5
(-2.7)
A 		2
(-3)
A 		15
(3)
A 		7.8
(-0.3)
A 		13
avr 3.2
(-2.4) 		5.3
(-1.1) 		4.1
(-1.8) 		2.2
(-3) 		12.1
(3) 		10.6
(2.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11325
Sequence Type Exemplar sequence
Representative Public ID R13D7.4 NCBI
Target Description R13D7.4 /REP_DB=WormBase Gene ID /WP=CE18151 /GB=AAK72301.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072494(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072494 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-60) (srx-60) mRNA, complete cds. 9/11 None
R13D7.4 ENSEMBL cdna:known chromosome:CEL140:V:7403480:7404784:1 gene:R13D7.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7403480-7404785(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-60
Ensembl R13D7.4
Entrez Gene 187858 Entrez gene
SwissProt Q966G7 EMBL-EBI
WormBase CE36558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504895 Serpentine Receptor, class X family member (srx-60) [Caenorhabditis elegans] gb|AAK72301.2| Serpentine receptor, class x protein 60 [Caenorhabditis elegans] 1.0E-173
blast AAB94252 Serpentine receptor, class x protein 67 [Caenorhabditis elegans] ref|NP_504084.2| Serpentine Receptor, class X family member (srx-67) [Caenorhabditis elegans] 1.0E-122
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 5.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504895.2 7 10-32,45-67,77-99,120-142,176-195,216-238,242-264
R13D7.4 7 10-32,45-67,77-99,120-142,176-195,216-238,242-264
Sequence
Target Sequence 
>C. ELEGANS:176706_AT
aactcatttggatacctcactgcaaatcaagcaattgtagatgcccttcattcgctaaaa
ttcatgctaaaaaaagaaaataataataataaatgttcaatagttctctgccacgtggct
tacttggaagagattcattttattcaatttactaacactaaattctgtggctttgttgct
tggtatgatgattttgtgaaaaattctgtaattatcgcaatagttgtttgtgtggatatt
tcaactgttcttcgcgttcatcatgtaaccaaaaaggtacgtggcgacaacaaattcacg
cttcgagatttgcgattcctgagacaatcggtttttcaaggaaccgtatttcttctagag
ttagtaacatatttcttcatcccacagtattttcacaatcagtggatcatttttcttgga
acttctttcatgtgggtttcaattcatgcaatcgatggaatgatcgtcgtcatgtgcaac
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCATTTGGATACCTCACTGCAA 73 141 121 Antisense
GCAATTGTAGATGCCCTTCATTCGC 511 323 151 Antisense
AAATGTTCAATAGTTCTCTGCCACG 53 121 211 Antisense
AAATTCTGTGGCTTTGTTGCTTGGT 625 113 280 Antisense
GGATATTTCAACTGTTCTTCGCGTT 141 509 354 Antisense
GTTCTTCGCGTTCATCATGTAACCA 594 443 367 Antisense
CACGCTTCGAGATTTGCGATTCCTG 525 199 417 Antisense
TAGTAACATATTTCTTCATCCCACA 78 655 482 Antisense
TTCATCCCACAGTATTTTCACAATC 460 687 496 Antisense
GGAACTTCTTTCATGTGGGTTTCAA 173 529 538 Antisense
GAATGATCGTCGTCATGTGCAACCC 16 329 578 Antisense
Sequence Source Affymetrix Proprietary Database