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[176705_at]

Description C36B7.4 /REP_DB=WormBase Gene ID /WP=CE25805 /GB=AAK68230.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 59.9
(-2.7)
A 		171.3
(0.1)
A 		46.9
(-3)
A 		288.9
(3)
P 		242
B 110.6
(0.6)
A 		22.9
(-3)
A 		56.2
(-1.6)
A 		169.1
(3)
P 		146
C 88.3
(-2.3)
A 		71.8
(-2.7)
A 		63.3
(-3)
A 		265.5
(3)
P 		202
avr 86.3
(-2) 		88.7
(-1.9) 		55.5
(-3) 		241.2
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 22.8
(-3)
A 		42
(-2)
A 		133
(3)
A 		66.7
(-0.6)
A 		131
(2.9)
M 		131.5
(2.9)
P 		110
B 42.6
(-3)
A 		72.4
(-1.4)
A 		79.7
(-1)
P 		152.9
(3)
P 		112.4
(0.8)
P 		142.2
(2.4)
M 		110
C 12.6
(-3)
A 		86
(-0.4)
A 		117.6
(0.8)
A 		179.5
(3)
P 		78.5
(-0.6)
A 		133.2
(1.3)
P 		167
avr 26
(-3) 		66.8
(-0.8) 		110.1
(1.6) 		133
(2.9) 		107.3
(1.5) 		135.6
(3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 21.8
(-1.1)
A 		37.2
(2)
A 		12.3
(-3)
A 		42.3
(3)
P 		30
B 35.3
(2.9)
A 		5.7
(-3)
A 		13
(-1.6)
A 		36
(3)
P 		30
C 29.2
(-0.9)
A 		20.6
(-3)
A 		22.1
(-2.6)
A 		44.8
(3)
P 		24
avr 28.8
(0.1) 		21.2
(-1.7) 		15.8
(-3) 		41
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 4.2
(-3)
A 		14.9
(-1.2)
A 		29
(1.2)
A 		16.9
(-0.8)
A 		39.5
(3)
M 		32
(1.7)
P 		35
B 14.8
(-3)
A 		24.1
(-1.5)
A 		19.4
(-2.3)
P 		40.5
(1)
P 		45.7
(1.9)
P 		53
(3)
M 		38
C 4.7
(-3)
A 		26.3
(0.2)
A 		29.9
(0.8)
A 		36.1
(1.7)
P 		25.4
(0.1)
A 		44.6
(3)
P 		40
avr 7.9
(-3) 		21.8
(-0.6) 		26.1
(0.1) 		31.2
(1) 		36.9
(1.9) 		43.2
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17125
Sequence Type Exemplar sequence
Representative Public ID C36B7.4 NCBI
Target Description C36B7.4 /REP_DB=WormBase Gene ID /WP=CE25805 /GB=AAK68230.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076792 NCBI Caenorhabditis elegans C36B7.4 (C36B7.4) mRNA, complete cds. 11/11 None
C36B7.4 ENSEMBL cdna:known chromosome:CEL140:X:7085621:7088041:-1 gene:C36B7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024834 7/11 Cross Hyb Matching Probes None
GENEFINDER00000024846 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7085619-7088040(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36B7.4
Entrez Gene 183256 Entrez gene
SwissProt Q966Q1 EMBL-EBI
WormBase CE25805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509193 C36B7.4 [Caenorhabditis elegans] gb|AAK68230.1| Hypothetical protein C36B7.4 [Caenorhabditis elegans] 9.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509193.1 2 7-29,49-71
C36B7.4 2 7-29,49-71
Sequence
Target Sequence 
>C. ELEGANS:176705_AT
gaagccgtctgttttgtttgcataggggttctgatcatcttacttggtgtaatcagctct
atattcttgtggctctcagaaaatacattctacaatccatgctctttgaatgtgtacaaa
gatgtctataaacaatttgtcgtcacaatgaagttaattcttcaaattctgttatttttg
gttgtgctgacctacgacttcggcaaccatgaaaccactcgccttgtcacgaaggtaatt
gatttgaaaccaaccaccatgaaacactacaaaacttccgctggatttgtctacaacttc
gagaatatgcgaagagcttttccaaagcacaacttcttggcgttgaagaacgttactgat
ttccgaaccaacaatgaaactcaaacagcgcgcgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGTCTGTTTTGTTTGCATAG 117 345 25 Antisense
GCATAGGGGTTCTGATCATCTTACT 186 307 44 Antisense
GCTCTATATTCTTGTGGCTCTCAGA 223 301 80 Antisense
TACATTCTACAATCCATGCTCTTTG 297 645 108 Antisense
TTTGGTTGTGCTGACCTACGACTTC 230 667 201 Antisense
GACTTCGGCAACCATGAAACCACTC 512 371 220 Antisense
ACCACTCGCCTTGTCACGAAGGTAA 542 83 238 Antisense
GAAACCAACCACCATGAAACACTAC 395 357 270 Antisense
GAAACACTACAAAACTTCCGCTGGA 128 357 285 Antisense
ACTTCCGCTGGATTTGTCTACAACT 502 103 298 Antisense
ATGAAACTCAAACAGCGCGCGTTCT 200 43 398 Antisense
Sequence Source Affymetrix Proprietary Database