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[176700_at]

Description T07E3.1 /REP_DB=WormBase Gene ID /WP=CE01382 /GB=AAA21080.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 24.4
(-2.7)
A 		22
(-3)
A 		35.3
(-1.5)
A 		74
(3)
P 		52
B 36.2
(-3)
A 		36.2
(-3)
A 		38.2
(-2.4)
A 		55.7
(3)
A 		20
C 31.1
(-2.6)
A 		24.2
(-3)
A 		39.1
(-2.1)
A 		126.9
(3)
P 		103
avr 30.6
(-2.7) 		27.5
(-3) 		37.5
(-2) 		85.5
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 32.9
(0.9)
A 		35
(1.2)
A 		48.9
(3)
A 		24.5
(-0.2)
A 		30
(0.5)
A 		3.7
(-3)
A 		45
B 33.9
(3)
M 		32.7
(2.6)
A 		15.2
(-3)
A 		16.4
(-2.6)
A 		25
(0.1)
A 		17.2
(-2.4)
A 		19
C 3.2
(-3)
A 		50.9
(3)
A 		3.9
(-2.9)
A 		32.4
(0.7)
A 		41.8
(1.9)
A 		20.7
(-0.8)
A 		48
avr 23.3
(-0.8) 		39.5
(3) 		22.7
(-0.9) 		24.4
(-0.5) 		32.3
(1.3) 		13.9
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.9
(1.1)
A 		4.8
(-3)
A 		9.2
(1.4)
A 		10.8
(3)
P 		6
B 11.5
(2.2)
A 		9
(-2.6)
A 		8.8
(-3)
A 		11.9
(3)
A 		3
C 10.3
(-1.6)
A 		7
(-3)
A 		13.6
(-0.3)
A 		21.4
(3)
P 		14
avr 10.2
(-0.5) 		6.9
(-3) 		10.5
(-0.2) 		14.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.1
(-0.3)
A 		12.5
(3)
A 		10.7
(2.1)
A 		6.2
(-0.3)
A 		9
(1.2)
A 		0.9
(-3)
A 		12
B 11.8
(3)
M 		10.9
(2.3)
A 		3.7
(-3)
A 		4.3
(-2.6)
A 		10.2
(1.8)
A 		6.4
(-1)
A 		8
C 1.2
(-2.9)
A 		15.5
(3)
A 		1
(-3)
A 		6.5
(-0.7)
A 		13.5
(2.2)
A 		6.9
(-0.6)
A 		15
avr 6.4
(-1.8) 		13
(3) 		5.1
(-2.7) 		5.7
(-2.3) 		10.9
(1.5) 		4.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6892
Sequence Type Exemplar sequence
Representative Public ID T07E3.1 NCBI
Target Description T07E3.1 /REP_DB=WormBase Gene ID /WP=CE01382 /GB=AAA21080.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066105 NCBI Caenorhabditis elegans T07E3.1 (T07E3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000020891 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6917872:6920082:1 11/11 None
T07E3.1 ENSEMBL cdna:known chromosome:CEL140:III:6918313:6920082:1 gene:T07E3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F25B4.3 2/11 Cross Hyb Matching Probes None
Y60A3A.11 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16763667-16765456(+) 20.56 96.16
Public Domain and Genome References
Ensembl T07E3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21080 Hypothetical protein T07E3.1 [Caenorhabditis elegans] ref|NP_498506.1| T07E3.1 [Caenorhabditis elegans] 0.0
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 0.0
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 0.0
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 1.0E-162
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.1E-75
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.1E-75
Sequence
Target Sequence 
>C. ELEGANS:176700_AT
ggtttttctcaaagtgtgtctttcaaaggtgcaatttatcgtactcgtcatacagtagta
ggctttcccaatttaatttattgtctacccaccatagacgggttcttcaaatcctccgaa
ccttccataaaattatttcaagcgagtatcacttcccgtccttatcatcgttcgttcgag
cttcacgctctactcgtcacccctatctacttgttgtctgtggcgtcccgtctaaatgtt
ttctacatgttaacttgtcactgtggaatcgaatagcaaaacgtttccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTTCTCAAAGTGTGTCTTTCA 613 505 1418 Antisense
GGTGCAATTTATCGTACTCGTCATA 163 501 1445 Antisense
GTCATACAGTAGTAGGCTTTCCCAA 8 467 1464 Antisense
TAATTTATTGTCTACCCACCATAGA 388 635 1491 Antisense
TACCCACCATAGACGGGTTCTTCAA 579 641 1503 Antisense
TATCATCGTTCGTTCGAGCTTCACG 435 659 1580 Antisense
ACCCCTATCTACTTGTTGTCTGTGG 122 91 1616 Antisense
CGTCCCGTCTAAATGTTTTCTACAT 561 245 1641 Antisense
GTTTTCTACATGTTAACTTGTCACT 248 449 1655 Antisense
CTTGTCACTGTGGAATCGAATAGCA 228 219 1671 Antisense
GAATCGAATAGCAAAACGTTTCCCT 378 329 1683 Antisense
Sequence Source Affymetrix Proprietary Database