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[176699_at]

Description C55B7.6 /REP_DB=WormBase Gene ID /WP=CE09017 /GB=AAK68277.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 17      6grp_total > 24      4grp_total > 31      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 231.4
(3)
P 		77.1
(-3)
A 		89.2
(-2.5)
P 		145.8
(-0.3)
P 		154
B 209.1
(3)
P 		89.7
(-3)
P 		95.4
(-2.7)
A 		154.2
(0.2)
P 		119
C 250.6
(3)
P 		106.1
(-2.4)
A 		89.2
(-3)
P 		206.5
(1.4)
P 		161
avr 230.4
(3) 		91
(-3) 		91.3
(-3) 		168.8
(0.3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 161.4
(3)
P 		147.1
(2.3)
P 		119.2
(0.9)
P 		115.8
(0.7)
P 		41
(-3)
A 		74.1
(-1.4)
A 		120
B 161
(3)
P 		128
(1.3)
P 		82.9
(-1)
P 		114.2
(0.6)
P 		74.7
(-1.4)
P 		43.8
(-3)
A 		117
C 142.6
(2.1)
P 		156.3
(3)
P 		142.6
(2.1)
P 		90.9
(-1.2)
P 		68.9
(-2.6)
A 		62.9
(-3)
P 		93
avr 155
(3) 		143.8
(2.3) 		114.9
(0.5) 		107
(-0) 		61.5
(-2.9) 		60.3
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 84.2
(3)
P 		16.7
(-3)
A 		23.3
(-2.4)
P 		21.3
(-2.6)
P 		68
B 66.7
(3)
P 		22.2
(-3)
P 		22.1
(-3)
A 		32.9
(-1.5)
P 		45
C 83
(3)
P 		30.5
(-3)
A 		31.1
(-2.9)
P 		34.8
(-2.5)
P 		53
avr 78
(3) 		23.1
(-3) 		25.5
(-2.7) 		29.7
(-2.3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 29.8
(-0.4)
P 		52.3
(3)
P 		26
(-1)
P 		29.4
(-0.4)
P 		12.4
(-3)
A 		18
(-2.2)
A 		40
B 56
(3)
P 		42.6
(1)
P 		20.1
(-2.4)
P 		30.3
(-0.9)
P 		30.4
(-0.9)
P 		16.3
(-3)
A 		40
C 52.9
(3)
P 		47.7
(2.1)
P 		36.3
(0.1)
P 		18.3
(-3)
P 		22.3
(-2.3)
A 		21.1
(-2.5)
P 		35
avr 46.2
(2.7) 		47.5
(3) 		27.5
(-1.1) 		26
(-1.4) 		21.7
(-2.3) 		18.5
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1401
Sequence Type Exemplar sequence
Representative Public ID C55B7.6 NCBI
Target Description C55B7.6 /REP_DB=WormBase Gene ID /WP=CE09017 /GB=AAK68277.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059465(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059465 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-1) (sulp-1) mRNA, complete cds. 10/11 None
SNAP00000038296 ENSEMBL cdna:SNAP chromosome:CEL140:I:6490586:6493992:1 10/11 None
GENEFINDER00000038309 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6490586:6493992:1 10/11 None
C55B7.6 ENSEMBL cdna:known chromosome:CEL140:I:6490586:6493096:1 gene:C55B7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6490514-6493025(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sulp-1
Ensembl C55B7.6
Entrez Gene 183842 Entrez gene
SwissProt Q58QG7 EMBL-EBI
WormBase CE38591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491866 SULfate Permease family member (sulp-1) [Caenorhabditis elegans] gb|AAX34419.1| anion transporter SULP-1a [Caenorhabditis elegans] gb|AAX34431.1| anion transporter SULP-1b [Caenorhabditis elegans] gb|AAK68277.2| Sulfate permease family protein 1 [Caenorhabditis elegans] 0.0
blast CAE67203 Hypothetical protein CBG12639 [Caenorhabditis briggsae] 0.0
blast CAE75275 Hypothetical protein CBG23241 [Caenorhabditis briggsae] 6.0E-24
blast CAE75275 Hypothetical protein CBG23241 [Caenorhabditis briggsae] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 2.5E-8
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 1.8E-9
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 1.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491866.2 8 83-105,174-196,244-263,275-297,317-339,360-377,417-439,460-482
C55B7.6 8 83-105,174-196,244-263,275-297,317-339,360-377,417-439,460-482
SNAP00000038296 8 83-105,174-196,244-263,275-297,317-339,360-377,417-439,460-482
GENEFINDER00000038309 8 83-105,174-196,244-263,275-297,317-339,360-377,417-439,460-482
Sequence
Target Sequence 
>C. ELEGANS:176699_AT
gttctgtcattgattcccacaattttaatggttcattttggagcaccattgttcaatgct
cttccaatttgtgcaattggtatcatggtgataacatctttcaatggttggtttagtgat
ctcaaaaatatacgagaaattttttattcctctacatgggatgcggcaattgctatggct
gcaattgtgagtgctttaattttcccaaatgtgtgcactggcttcatctgtatgttgttt
tgctcaattttcgcagtttcattgaaagtccaattcccgaatgttgaggttcttgccaag
ctgtctgagtcgcattttgctgaggagaatcgctgtgttgtaaatattcttaaaccgtca
tgttccagttacgaaggtgattgccttgatactcctcttcgaatcattcgtctcagtgga
ccacttctttccgttaattgtgaaagtatcagaagtgaacttttcaaacaggcggttgtt
gtcaaaggtctgatcggaattggaatcggaactcgaactgcatctttacgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTGTCATTGATTCCCACAATTT 67 443 1213 Antisense
AGCACCATTGTTCAATGCTCTTCCA 525 77 1254 Antisense
GGGATGCGGCAATTGCTATGGCTGC 104 497 1370 Antisense
AAATGTGTGCACTGGCTTCATCTGT 230 121 1419 Antisense
GTTGAGGTTCTTGCCAAGCTGTCTG 242 437 1495 Antisense
AAGCTGTCTGAGTCGCATTTTGCTG 183 149 1510 Antisense
TAAACCGTCATGTTCCAGTTACGAA 617 627 1563 Antisense
GAAGGTGATTGCCTTGATACTCCTC 449 335 1585 Antisense
GATACTCCTCTTCGAATCATTCGTC 120 425 1600 Antisense
GGACCACTTCTTTCCGTTAATTGTG 654 513 1630 Antisense
GGAACTCGAACTGCATCTTTACGTA 491 529 1720 Antisense
Sequence Source Affymetrix Proprietary Database