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[176698_at]

Description C06A6.1 /REP_DB=WormBase Gene ID /WP=CE03939 /GB=AAK68166.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 62      6grp_total > 41      4grp_total > 41      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 428
(-3)
P 		696.5
(3)
P 		593.6
(0.7)
P 		531.7
(-0.7)
P 		269
B 476.3
(-2.5)
P 		540.3
(0)
P 		614.8
(3)
P 		464.3
(-3)
P 		151
C 494.4
(-3)
P 		670.5
(3)
P 		591.4
(0.3)
P 		548.3
(-1.2)
P 		176
avr 466.2
(-3) 		635.8
(3) 		599.9
(1.7) 		514.8
(-1.3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 399.6
(-1.6)
P 		635.8
(3)
P 		513.6
(0.6)
P 		562.3
(1.6)
P 		329
(-3)
P 		416.6
(-1.3)
P 		307
B 444.5
(-0.6)
P 		517.9
(0.6)
P 		653.7
(3)
P 		478.5
(-0.1)
P 		309.7
(-3)
P 		312.8
(-2.9)
P 		344
C 532.3
(0.6)
P 		458.6
(-0.3)
P 		709.2
(3)
P 		481.1
(-0)
P 		402.3
(-1.1)
P 		259.8
(-3)
P 		449
avr 458.8
(-0.4) 		537.4
(1.2) 		625.5
(3) 		507.3
(0.6) 		347
(-2.6) 		329.7
(-3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 155.9
(3)
P 		151.2
(2.6)
P 		155.2
(2.9)
P 		77.8
(-3)
P 		78
B 151.9
(3)
P 		133.4
(0.9)
P 		142.5
(1.9)
P 		98.9
(-3)
P 		53
C 163.7
(0.8)
P 		192.8
(2.3)
P 		206.1
(3)
P 		92.5
(-3)
P 		114
avr 157.2
(2.2) 		159.1
(2.3) 		167.9
(3) 		89.7
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 73.7
(-3)
P 		226.1
(3)
P 		111.9
(-1.5)
P 		142.6
(-0.3)
P 		99.3
(-2)
P 		101.4
(-1.9)
P 		152
B 154.7
(1.1)
P 		172.4
(3)
P 		158.7
(1.5)
P 		126.8
(-1.9)
P 		125.8
(-2)
P 		116.6
(-3)
P 		56
C 197.3
(3)
P 		139.9
(-0.1)
P 		180.5
(2.1)
P 		96.8
(-2.5)
P 		130.2
(-0.7)
P 		87
(-3)
P 		110
avr 141.9
(0.1) 		179.5
(3) 		150.4
(0.8) 		122.1
(-1.4) 		118.4
(-1.7) 		101.7
(-3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9231
Sequence Type Exemplar sequence
Representative Public ID C06A6.1 NCBI
Target Description C06A6.1 /REP_DB=WormBase Gene ID /WP=CE03939 /GB=AAK68166.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171386(11), NM_171911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171386 NCBI Caenorhabditis elegans C06A6.2b (C06A6.2) mRNA, complete cds. 11/11 A 
NM_171911 NCBI Caenorhabditis elegans C06A6.2a (C06A6.2) mRNA, complete cds. 11/11 A 
SNAP00000043494 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7852428:7853904:1 11/11 None
GENEFINDER00000043504 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7852428:7853904:1 11/11 None
C06A6.2b ENSEMBL cdna:known chromosome:CEL140:IV:7846625:7854102:1 gene:C06A6.2 11/11 A 
C06A6.2a ENSEMBL cdna:known chromosome:CEL140:IV:7846625:7854102:1 gene:C06A6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7852433-7853910(+) 100.0 100.0
Public Domain and Genome References
Ensembl C06A6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM75376 Hypothetical protein C06A6.2b [Caenorhabditis elegans] ref|NP_741449.1| C06A6.2b [Caenorhabditis elegans] 0.0
blast AAM75375 Hypothetical protein C06A6.2a [Caenorhabditis elegans] ref|NP_741450.1| C06A6.2a [Caenorhabditis elegans] 0.0
blast T29270 hypothetical protein C06A6.2 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:176698_AT
gaatcacctccaggaagttctcgaatgatcgtgtacaatgataccagaaaaaccacaaac
gcaccaatatcaacatgggttccaccaagagaagatttaacagcaaaagtaaaggatgaa
acagttcaatcagttccacagagaaaagcacaagcaactgctgtaatcaaaagtggattt
ccactcgaaaaacatttgaaaaaacaagccgttccctcgatgatcccagtaaccagctca
tcgattcctcaacgaaatggcattctcggattgaattctatgattcttccaccgtcggct
attcaacaagcacttttgaagaaaatggatgttccaacaacaacaccatcaatgtcttca
acttcatcttctcaggcacaatcatcgatgaatggagtaattaatggaaataacaccgaa
gtagaagataaatggacactgttgggccgaatgattgcaatgatggctcgtgaaatagag
acacgtgatccaatgtcagcatgtgaactaacaagagatctacaacaagtcatattccaa
tacaatatgaaaactcttcgccccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACCTCCAGGAAGTTCTCGAA 219 327 262 Antisense
AAACCACAAACGCACCAATATCAAC 547 125 311 Antisense
TGAAAAAACAAGCCGTTCCCTCGAT 238 571 458 Antisense
TCGATGATCCCAGTAACCAGCTCAT 575 601 478 Antisense
CAGCTCATCGATTCCTCAACGAAAT 280 203 495 Antisense
TTCTTCCACCGTCGGCTATTCAACA 697 687 545 Antisense
ACACCATCAATGTCTTCAACTTCAT 580 109 604 Antisense
ACTTCATCTTCTCAGGCACAATCAT 433 103 622 Antisense
GGACACTGTTGGGCCGAATGATTGC 10 527 695 Antisense
ACACGTGATCCAATGTCAGCATGTG 272 109 742 Antisense
CAATATGAAAACTCTTCGCCCCAAA 352 181 804 Antisense
Sequence Source Affymetrix Proprietary Database