[Home] | [Total List]

[176697_at]

Description C52E2.4 /REP_DB=WormBase Gene ID /WP=CE25828 /GB=AAK67219.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      6grp_highest_nonorm > 91      6grp_total > 85      4grp_total > 05      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 272.6
(-0.5)
P 		180.5
(-2.7)
M 		167.1
(-3)
P 		423.4
(3)
P 		256
B 275.5
(0.9)
P 		175.5
(-2.5)
A 		162.5
(-3)
P 		335.3
(3)
P 		173
C 265.5
(0.1)
P 		138.1
(-3)
A 		192.4
(-1.7)
P 		384.7
(3)
P 		247
avr 271.2
(-0) 		164.7
(-3) 		174
(-2.7) 		381.1
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 222
(0.7)
P 		183.9
(-2.3)
P 		175.1
(-3)
P 		250.6
(3)
P 		209.1
(-0.3)
P 		211.6
(-0.1)
P 		76
B 154.3
(-1.3)
P 		127
(-3)
P 		150.4
(-1.5)
P 		221.6
(3)
P 		183.4
(0.6)
P 		198.6
(1.5)
P 		95
C 185
(-1.2)
P 		167.9
(-2.4)
P 		197.4
(-0.2)
P 		217
(1.2)
P 		160.5
(-3)
P 		240.6
(3)
P 		80
avr 187.1
(-0.6) 		159.6
(-3) 		174.3
(-1.7) 		229.7
(3) 		184.3
(-0.9) 		216.9
(1.9) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 99.3
(3)
P 		39.2
(-3)
M 		43.7
(-2.6)
P 		62
(-0.7)
P 		60
B 87.9
(3)
P 		43.3
(-2.3)
A 		37.6
(-3)
P 		71.5
(1)
P 		50
C 87.9
(3)
P 		39.7
(-3)
A 		67
(0.4)
P 		64.9
(0.1)
P 		48
avr 91.7
(3) 		40.7
(-3) 		49.4
(-2) 		66.1
(-0) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 40.9
(-2.4)
P 		65.4
(3)
P 		38.1
(-3)
P 		63.6
(2.6)
P 		63.1
(2.5)
P 		51.5
(-0.1)
P 		27
B 53.7
(-0.3)
P 		42.3
(-2.1)
P 		36.5
(-3)
P 		58.7
(0.5)
P 		74.5
(3)
P 		74.1
(2.9)
P 		38
C 68.6
(1.1)
P 		51.2
(-1.8)
P 		50.3
(-1.9)
P 		43.6
(-3)
P 		51.9
(-1.7)
P 		80.5
(3)
P 		37
avr 54.4
(-0.2) 		53
(-0.5) 		41.6
(-3) 		55.3
(0) 		63.2
(1.8) 		68.7
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4336
Sequence Type Exemplar sequence
Representative Public ID C52E2.4 NCBI
Target Description C52E2.4 /REP_DB=WormBase Gene ID /WP=CE25828 /GB=AAK67219.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061691 NCBI Caenorhabditis elegans C52E2.4 (C52E2.4) mRNA, complete cds. 11/11 None
SNAP00000007509 ENSEMBL cdna:SNAP chromosome:CEL140:II:1845018:1846186:1 11/11 None
GENEFINDER00000007522 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1843592:1846186:1 11/11 None
C52E2.4 ENSEMBL cdna:known chromosome:CEL140:II:1843192:1846186:1 gene:C52E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1843590-1846185(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E2.4
Entrez Gene 173555 Entrez gene
SwissProt Q95Y49 EMBL-EBI
WormBase CE25828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67219 Hypothetical protein C52E2.4 [Caenorhabditis elegans] ref|NP_494092.1| C52E2.4 [Caenorhabditis elegans] 0.0
blast AAC26320 Hypothetical protein T08E11.1 [Caenorhabditis elegans] ref|NP_494090.2| T08E11.1 [Caenorhabditis elegans] 1.0E-126
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-15
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.9E-16
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-15
Sequence
Target Sequence 
>C. ELEGANS:176697_AT
ttcgcaaattgctgactcttgccccgaagatctctttaaatcaatttatgataaaactgc
tggaagggatcatcaaacgggtcgtttttcttccagtagaaaaaatgaccattgaaactg
acgagttagagcttatggctcgaatacttctactctcagactccagctcgataaaagtaa
ttgaattgagaagacgctacccgtctggttttatcttaaatgaatttatggaacagctcg
caagtctggcgcattggagaaatgcagaagaatttatgatcaatattttcctgccaagtt
cgagcattaaaacggtaattcactttgcaaaagtcgatataagattggaggcaatttcaa
tggaagatgttttatatttgaaggagaaattcctattgtcttctaaattccgtcaattca
aagccgagttcaccgacactgacgttgatgaatccatttttgaagttaactttttgggag
agccattccgcagaatcgacgaccccaccacaaatttaccgaacgtttggcgtttccgct
accctggttgcagagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCAAATTGCTGACTCTTGCCCC 411 695 1364 Antisense
CTCTTGCCCCGAAGATCTCTTTAAA 644 225 1379 Antisense
AGCTTATGGCTCGAATACTTCTACT 607 77 1493 Antisense
AGACGCTACCCGTCTGGTTTTATCT 335 69 1555 Antisense
AACAGCTCGCAAGTCTGGCGCATTG 117 137 1595 Antisense
TGATCAATATTTTCCTGCCAAGTTC 334 565 1640 Antisense
TCCTATTGTCTTCTAAATTCCGTCA 184 593 1754 Antisense
CGTCAATTCAAAGCCGAGTTCACCG 139 241 1774 Antisense
AGTTCACCGACACTGACGTTGATGA 92 65 1790 Antisense
TTGGGAGAGCCATTCCGCAGAATCG 405 707 1837 Antisense
TTCCGCTACCCTGGTTGCAGAGAGA 72 699 1897 Antisense
Sequence Source Affymetrix Proprietary Database