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[176696_at]

Description Y66A7A.2 /REP_DB=WormBase Gene ID /WP=CE22751 /GB=CAC35866.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 44      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 80      6grp_total > 20      4grp_total > 60      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 222.3
(3)
P 		222.2
(3)
P 		207.4
(0)
P 		192.1
(-3)
P 		30
B 245.4
(1.5)
P 		247
(1.6)
P 		267.1
(3)
P 		177.9
(-3)
P 		89
C 233.3
(0.4)
P 		230.2
(0.1)
P 		260.7
(3)
P 		196.5
(-3)
P 		64
avr 233.7
(1.8) 		233.1
(1.7) 		245.1
(3) 		188.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 181.2
(-0.3)
P 		192.8
(1.1)
P 		183.2
(-0)
P 		208.6
(3)
P 		167.2
(-2)
P 		158.5
(-3)
P 		50
B 152.6
(-3)
P 		229.1
(2.1)
P 		243.2
(3)
P 		176.9
(-1.4)
P 		166
(-2.1)
P 		219.5
(1.4)
P 		91
C 211.6
(0.2)
P 		243.6
(3)
P 		223.7
(1.3)
P 		228
(1.7)
P 		173.8
(-3)
P 		212.3
(0.3)
P 		70
avr 181.8
(-1.5) 		221.8
(3) 		216.7
(2.4) 		204.5
(1) 		169
(-3) 		196.8
(0.2) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 80.9
(3)
P 		48.2
(-0.7)
P 		54.2
(-0)
P 		28.1
(-3)
P 		53
B 78.3
(3)
P 		61
(0.4)
P 		61.9
(0.6)
P 		37.9
(-3)
P 		40
C 77.2
(1.6)
P 		66.2
(0.4)
P 		90.9
(3)
P 		33.1
(-3)
P 		58
avr 78.8
(3) 		58.5
(0.3) 		69
(1.7) 		33
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 33.4
(-3)
P 		68.6
(3)
P 		39.9
(-1.9)
P 		52.9
(0.3)
P 		50.5
(-0.1)
P 		38.6
(-2.1)
P 		35
B 53.1
(-1.9)
P 		76.2
(2)
P 		59.1
(-0.9)
P 		46.9
(-3)
P 		67.4
(0.5)
P 		81.9
(3)
P 		35
C 78.4
(3)
P 		74.3
(2.2)
P 		56.9
(-1)
P 		45.8
(-3)
P 		56.3
(-1.1)
P 		71.1
(1.7)
P 		33
avr 55
(-1.4) 		73
(3) 		52
(-2.1) 		48.5
(-3) 		58.1
(-0.6) 		63.9
(0.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6424
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.2 NCBI
Target Description Y66A7A.2 /REP_DB=WormBase Gene ID /WP=CE22751 /GB=CAC35866.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067076 NCBI Caenorhabditis elegans Y66A7A.2 (Y66A7A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011518 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11485442:11487221:-1 11/11 None
Y66A7A.2 ENSEMBL cdna:known chromosome:CEL140:III:11485442:11487201:-1 gene:Y66A7A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011506 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026758 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11485437-11487197(-) 99.37 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66A7A.2
Entrez Gene 176577 Entrez gene
SwissProt Q9XWY3 EMBL-EBI
WormBase CE22751 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35866 Hypothetical protein Y66A7A.2 [Caenorhabditis elegans] ref|NP_499477.1| Y66A7A.2 [Caenorhabditis elegans] emb|CAA21502.1| Y66A7A.2 [Caenorhabditis elegans] 2.0E-85
blast CAE67707 Hypothetical protein CBG13279 [Caenorhabditis briggsae] 3.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002759 EMBL-EBI Ribonuclease P-related protein 2.0E-43
Pfam IPR002759 EMBL-EBI Ribonuclease P-related protein 2.0E-43
Sequence
Target Sequence 
>C. ELEGANS:176696_AT
cgctactacgtgattcgaatgctcacaaatgatggctcaccaccgacaccaagaaaatcg
tcgatttttcaagaactcatgaaactcacgtcggaaatgtttggagattttggatattct
attttgaaaatgagcctttcggttcgagttctcgacgaagacgtgatcgtactccgagtg
gccgaaggcggaaataaatattttggagcaattcttccatgtgttcataaaattgataag
cagccaatggtcttgcagactattttcattggcagaagcatgagatcttgcgagaaacga
ctcatcaaaagccgccgagacgagcttcacgatgctctcggaaaatgcacaaaaactgaa
actcgaacccaacttctggaagcaatccatcaaatttgcggtcaaccggctcgaattttc
agcgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTACTACGTGATTCGAATGCTCA 24 255 31 Antisense
GCTCACAAATGATGGCTCACCACCG 608 301 51 Antisense
AATGAGCCTTTCGGTTCGAGTTCTC 504 161 159 Antisense
AAGACGTGATCGTACTCCGAGTGGC 72 153 188 Antisense
GAGCAATTCTTCCATGTGTTCATAA 398 391 236 Antisense
GGTCTTGCAGACTATTTTCATTGGC 585 503 279 Antisense
AGAAACGACTCATCAAAAGCCGCCG 637 69 323 Antisense
AGACGAGCTTCACGATGCTCTCGGA 353 71 348 Antisense
GAAACTCGAACCCAACTTCTGGAAG 584 355 388 Antisense
TCCATCAAATTTGCGGTCAACCGGC 478 591 416 Antisense
AACCGGCTCGAATTTTCAGCGACGA 146 147 434 Antisense
Sequence Source Affymetrix Proprietary Database