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[176695_at]

Description F18E3.9 /REP_DB=WormBase Gene ID /WP=CE09467 /GB=AAK18934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 22      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 28.9
(2.2)
A 		32.9
(3)
A 		2.7
(-3)
A 		11.2
(-1.3)
A 		30
B 21.1
(1.6)
A 		2
(-3)
A 		26.8
(3)
A 		6.2
(-2)
A 		25
C 26.8
(-0.3)
A 		3.1
(-3)
A 		3
(-3)
A 		55.7
(3)
A 		53
avr 25.6
(3) 		12.7
(-2.2) 		10.8
(-3) 		24.4
(2.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 4.8
(-3)
A 		12.3
(-0.4)
A 		21.9
(3)
A 		17.6
(1.5)
A 		7.2
(-2.2)
A 		5.2
(-2.9)
A 		17
B 6.7
(-2.8)
A 		48.6
(3)
A 		5.2
(-3)
A 		6.8
(-2.8)
A 		16.1
(-1.5)
A 		25.9
(-0.1)
A 		43
C 21.4
(-0.6)
A 		35.5
(1.5)
A 		14.2
(-1.7)
A 		45.6
(3)
A 		5.7
(-3)
A 		20.3
(-0.8)
A 		40
avr 11
(-2.7) 		32.1
(3) 		13.8
(-1.9) 		23.3
(0.6) 		9.7
(-3) 		17.1
(-1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.5
(3)
A 		7.1
(0.9)
A 		0.7
(-3)
A 		1.6
(-2.4)
A 		10
B 6.7
(3)
A 		0.5
(-3)
A 		6.2
(2.5)
A 		1.3
(-2.2)
A 		6
C 8.9
(2.6)
A 		0.9
(-3)
A 		1
(-2.9)
A 		9.4
(3)
A 		9
avr 8.7
(3) 		2.8
(-2.8) 		2.6
(-3) 		4.1
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.9
(-3)
A 		4.4
(2.4)
A 		4.8
(3)
A 		4.5
(2.5)
A 		2.2
(-1)
A 		1.3
(-2.4)
A 		4
B 2.3
(-2.6)
A 		16.2
(3)
A 		1.3
(-3)
A 		1.8
(-2.8)
A 		6.5
(-0.9)
A 		9.7
(0.4)
A 		15
C 7.9
(1.1)
A 		10.8
(3)
A 		3.6
(-1.8)
A 		9.2
(1.9)
A 		1.8
(-3)
A 		6.8
(0.3)
A 		9
avr 3.7
(-2.6) 		10.5
(3) 		3.2
(-3) 		5.2
(-1.4) 		3.5
(-2.8) 		5.9
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12144
Sequence Type Exemplar sequence
Representative Public ID F18E3.9 NCBI
Target Description F18E3.9 /REP_DB=WormBase Gene ID /WP=CE09467 /GB=AAK18934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F18E3.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:7434414:7435812:1 gene:F18E3.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7434041-7435753(+) 100.0 100.0
Public Domain and Genome References
Ensembl F18E3.9
Sequence
Target Sequence 
>C. ELEGANS:176695_AT
gagaacttcgcaaaacctatcacaggttgtcttttgtctctaatgattttgattttgctc
acattggcatctggtatttactatgtgcaattttacattcaaacgtcaagtttttggaag
ccaccaaaaaagtctgcattttcaaaacatagaaaatcaatattcaaattccaggcccca
ataaacatactatacccaattttggcattgtttttgatgtacgaagtttgcaaatcagct
aagtttgcttctgcaaaattgagtcagaaaacagctcttgaaagataccattctgcccgt
atgattttggtaatggccgtgttatatttcatagtcggcgcaccaggcggtgtccttaat
tttctcacacttttcgtggaaatagacttcggttcgattcttatcatacttgtcacctat
gcgcctgtatacatgtcaactttattttgtttcaacgcaatgtcccacttgatcaatttc
tcaatgtcctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACTTCGCAAAACCTATCACAG 620 391 409 Antisense
ATCACAGGTTGTCTTTTGTCTCTAA 330 27 427 Antisense
GATTTTGCTCACATTGGCATCTGGT 661 429 459 Antisense
TCAATATTCAAATTCCAGGCCCCAA 304 633 565 Antisense
GATACCATTCTGCCCGTATGATTTT 156 425 692 Antisense
TATATTTCATAGTCGGCGCACCAGG 483 659 731 Antisense
TCCTTAATTTTCTCACACTTTTCGT 578 591 761 Antisense
GATTCTTATCATACTTGTCACCTAT 615 431 804 Antisense
TCACCTATGCGCCTGTATACATGTC 494 623 821 Antisense
ACGCAATGTCCCACTTGATCAATTT 708 91 863 Antisense
TGATCAATTTCTCAATGTCCTCCAA 46 565 878 Antisense
Sequence Source Affymetrix Proprietary Database