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[176694_at]

Description C52E2.6 /REP_DB=WormBase Gene ID /WP=CE25830 /GB=AAK67220.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.3
(-3)
A 		19.3
(-0.8)
A 		39.9
(3)
A 		8.4
(-2.8)
A 		33
B 12.7
(-1.6)
A 		6.8
(-2.5)
A 		41.4
(3)
A 		3.7
(-3)
A 		38
C 28.4
(-2.4)
A 		52.3
(3)
A 		25.6
(-3)
A 		34.2
(-1.1)
P 		27
avr 16.1
(-2.8) 		26.1
(0.2) 		35.6
(3) 		15.4
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 29.1
(3)
A 		11.9
(-1.2)
A 		4.4
(-3)
A 		5.8
(-2.7)
A 		24.5
(1.9)
A 		7.9
(-2.1)
A 		25
B 30.8
(0.3)
A 		30.5
(0.3)
A 		52.5
(3)
A 		13
(-1.8)
A 		3.6
(-3)
A 		40.6
(1.5)
P 		49
C 2.5
(-3)
A 		4.5
(-2.4)
A 		4.2
(-2.5)
A 		2.6
(-3)
A 		22.8
(3)
A 		8
(-1.4)
A 		20
avr 20.8
(3) 		15.6
(0.7) 		20.4
(2.8) 		7.1
(-3) 		17
(1.3) 		18.8
(2.1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.6
(-2.1)
A 		4.2
(-1)
A 		10.4
(3)
A 		1.2
(-3)
A 		9
B 4.1
(-0.8)
A 		1.7
(-2.4)
A 		9.6
(3)
A 		0.8
(-3)
A 		9
C 9.4
(-0.7)
A 		15
(3)
A 		8.9
(-1)
A 		5.8
(-3)
P 		9
avr 5.4
(-0.6) 		7
(0.8) 		9.6
(3) 		2.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.4
(1.1)
A 		4.2
(0)
A 		1
(-3)
A 		1.5
(-2.5)
A 		7.4
(3)
A 		1.9
(-2.2)
A 		6
B 10.7
(1.1)
A 		10.2
(0.8)
A 		12.7
(1.9)
A 		3.4
(-2.2)
A 		1.5
(-3)
A 		15.1
(3)
P 		14
C 0.9
(-2.7)
A 		1.4
(-2.2)
A 		1.1
(-2.5)
A 		0.5
(-3)
A 		7.4
(3)
A 		2.7
(-1.1)
A 		7
avr 5.7
(1.9) 		5.3
(1.4) 		4.9
(0.9) 		1.8
(-3) 		5.4
(1.5) 		6.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4520
Sequence Type Exemplar sequence
Representative Public ID C52E2.6 NCBI
Target Description C52E2.6 /REP_DB=WormBase Gene ID /WP=CE25830 /GB=AAK67220.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061692 NCBI Caenorhabditis elegans C52E2.6 (C52E2.6) mRNA, complete cds. 11/11 None
SNAP00000007510 ENSEMBL cdna:SNAP chromosome:CEL140:II:1846593:1847952:-1 10/11 None
GENEFINDER00000007520 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1847101:1850400:-1 10/11 None
C52E2.6 ENSEMBL cdna:known chromosome:CEL140:II:1846593:1848156:-1 gene:C52E2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013028 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013037 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1846591-1848156(-) 97.52 97.52
Public Domain and Genome References
Gene Title
Ensembl C52E2.6
Entrez Gene 183726 Entrez gene
SwissProt Q95Y48 EMBL-EBI
WormBase CE36808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67220 Hypothetical protein C52E2.6 [Caenorhabditis elegans] ref|NP_494093.3| C52E2.6 [Caenorhabditis elegans] 0.0
blast AAK67220 Hypothetical protein C52E2.6 [Caenorhabditis elegans] ref|NP_494093.3| C52E2.6 [Caenorhabditis elegans] 1.0E-171
blast AAK67220 Hypothetical protein C52E2.6 [Caenorhabditis elegans] ref|NP_494093.3| C52E2.6 [Caenorhabditis elegans] 1.0E-159
blast AAK67221 Hypothetical protein C52E2.7 [Caenorhabditis elegans] ref|NP_494094.1| C52E2.7 [Caenorhabditis elegans] 1.0E-153
blast AAB71075 Hypothetical protein ZK250.6 [Caenorhabditis elegans] ref|NP_494136.1| ZK250.6 [Caenorhabditis elegans] 1.0E-100
blast AAK67221 Hypothetical protein C52E2.7 [Caenorhabditis elegans] ref|NP_494094.1| C52E2.7 [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:176694_AT
gacgccatgagtatcaacattgccgacagagctctccttggtgagcagttcagagctatg
tgttccgagaacttgaatcgcctggagcttactgaaggatgtgccatcggacttgacgat
ctgctctcatgcaacgccaacgaactgaaaatcgagcacccattcactttatccgatttg
aatctatttatcaaacatttcatcaatgggtcaaatcctagactggaagaagctcatatt
gcattggcaggggacaacaaagaggactacaaagaggtcttgctgaaaggtatcaagtac
caaacgtctcactctttgacattctacgaagatggcttttcgattgatagcttcgaattt
cttcgcaacgacggaattgaagtatcggcttcggtggatgcaagaagtcaaaacttctac
ttggttgctaatctggacaattctccactttgcgatgattgctgtttttgcgcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCCATGAGTATCAACATTGCCG 241 381 556 Antisense
GCAGTTCAGAGCTATGTGTTCCGAG 57 313 600 Antisense
GAACTTGAATCGCCTGGAGCTTACT 142 351 624 Antisense
ATCGGACTTGACGATCTGCTCTCAT 323 35 661 Antisense
CACCCATTCACTTTATCCGATTTGA 105 201 712 Antisense
AACGTCTCACTCTTTGACATTCTAC 180 145 858 Antisense
GCTTCGAATTTCTTCGCAACGACGG 479 303 905 Antisense
AAGTATCGGCTTCGGTGGATGCAAG 418 157 935 Antisense
ACTTCTACTTGGTTGCTAATCTGGA 572 103 968 Antisense
GACAATTCTCCACTTTGCGATGATT 669 363 991 Antisense
CGATGATTGCTGTTTTTGCGCGAAC 682 249 1008 Antisense
Sequence Source Affymetrix Proprietary Database