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[176693_s_at]

Description C45B2.6 /REP_DB=WormBase Gene ID /WP=CE25817 /GB=AAK68250.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 71      6grp_total > 35      4grp_total > 39      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 523.9
(3)
P 		282.3
(-3)
P 		284.5
(-2.9)
P 		350.9
(-1.3)
P 		242
B 506.2
(3)
P 		392.3
(-0.7)
P 		320.4
(-3)
P 		345.3
(-2.2)
P 		186
C 444.5
(3)
P 		241.6
(-3)
P 		313.5
(-0.9)
P 		354.1
(0.3)
P 		203
avr 491.5
(3) 		305.4
(-3) 		306.1
(-3) 		350.1
(-1.6) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 402.3
(0.3)
P 		507.7
(3)
P 		363.6
(-0.8)
P 		349
(-1.1)
P 		277.6
(-3)
P 		370.4
(-0.6)
P 		230
B 319.3
(0.2)
P 		385.3
(3)
P 		320.8
(0.2)
P 		341.8
(1.1)
P 		245.4
(-3)
P 		331.6
(0.7)
P 		140
C 444.6
(1.8)
P 		484.3
(3)
P 		439.9
(1.7)
P 		295.4
(-2.7)
P 		325.1
(-1.8)
P 		285.5
(-3)
P 		199
avr 388.7
(0.6) 		459.1
(3) 		374.8
(0.1) 		328.7
(-1.4) 		282.7
(-3) 		329.2
(-1.4) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 190.8
(3)
P 		61.3
(-2.6)
P 		74.4
(-2)
P 		51.4
(-3)
P 		139
B 161.4
(3)
P 		96.9
(-1.4)
P 		74.2
(-3)
P 		73.6
(-3)
P 		88
C 147.1
(3)
P 		69.5
(-2.3)
P 		109.3
(0.4)
P 		59.7
(-3)
P 		87
avr 166.4
(3) 		75.9
(-2.2) 		86
(-1.6) 		61.6
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 74.2
(-3)
P 		180.6
(3)
P 		79.2
(-2.7)
P 		88.5
(-2.2)
P 		83.8
(-2.5)
P 		90.2
(-2.1)
P 		106
B 111.1
(1)
P 		128.2
(3)
P 		77.9
(-3)
P 		90.5
(-1.5)
P 		99.7
(-0.4)
P 		123.6
(2.5)
P 		50
C 164.8
(3)
P 		147.8
(2)
P 		112
(-0)
P 		59.4
(-3)
P 		105.2
(-0.4)
P 		95.6
(-0.9)
P 		105
avr 116.7
(0.1) 		152.2
(3) 		89.7
(-2.2) 		79.5
(-3) 		96.2
(-1.6) 		103.1
(-1.1) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176693_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16316
Sequence Type Exemplar sequence
Representative Public ID C45B2.6 NCBI
Target Description C45B2.6 /REP_DB=WormBase Gene ID /WP=CE25817 /GB=AAK68250.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076610 NCBI Caenorhabditis elegans C45B2.6 (C45B2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000012831 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6053016:6056966:1 11/11 None
SNAP00000012816 ENSEMBL cdna:SNAP chromosome:CEL140:X:6053058:6056966:1 11/11 None
C45B2.6 ENSEMBL cdna:known chromosome:CEL140:X:6053058:6057303:1 gene:C45B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6053057-6056966(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45B2.6
Entrez Gene 180874 Entrez gene
SwissProt Q95YD2 EMBL-EBI
WormBase CE25817 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68250 Hypothetical protein C45B2.6 [Caenorhabditis elegans] ref|NP_509011.1| C45B2.6 [Caenorhabditis elegans] 0.0
blast CAE68857 Hypothetical protein CBG14819 [Caenorhabditis briggsae] 0.0
blast XP_394049 PREDICTED: similar to CG6718-PB, isoform B [Apis mellifera] 5.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 4.3E-29
Pfam IPR002110 EMBL-EBI Ankyrin 1.3
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.2
Pfam IPR002641 EMBL-EBI Patatin 4.3E-29
Pfam IPR002110 EMBL-EBI Ankyrin 1.3
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.2
Sequence
Target Sequence 
>C. ELEGANS:176693_S_AT
ggttgctcgagtcgatatcagccctccgctactctacatgttccgcagttataacatcag
agacccgtcatttgatcaagctggcatgaagcctgtctgggcagctgcaaaagttgttag
ggcttcttcagcggcgccatcattcttcccacctgttgatggaaagtttatggacggagg
actaatcgctaataatccagctgttgacattcttactgattgtcaacgcctggaatatga
gagaaacgagcgtaatgtgtcaaagatcatggtttcaattggaactgggtcgatgcaaaa
gaaaattgagaatgttgacttgatgaagccaacaacaatgggtggaattgtgaacacgtt
caaccagattcttcacttaaaagacgtctttattgagcagctcacagcagctgatggagt
aaccgtcgaacgggctcgttggatggctgaagccatgggaatggctttcttccgtttcac
tccaaaccttgaattcccagttgctattgacgagaaggatgatagtgcgttgctggatgc
aatgctcgctgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGCTCGAGTCGATATCAGCCCT 644 507 1689 Antisense
CTACTCTACATGTTCCGCAGTTATA 61 227 1717 Antisense
GAGACCCGTCATTTGATCAAGCTGG 12 395 1748 Antisense
GCATGAAGCCTGTCTGGGCAGCTGC 287 311 1772 Antisense
TCATTCTTCCCACCTGTTGATGGAA 492 619 1828 Antisense
AACACGTTCAACCAGATTCTTCACT 7 135 2041 Antisense
AACCGTCGAACGGGCTCGTTGGATG 401 125 2109 Antisense
ATGGGAATGGCTTTCTTCCGTTTCA 424 49 2143 Antisense
TTCCGTTTCACTCCAAACCTTGAAT 328 697 2158 Antisense
GAATTCCCAGTTGCTATTGACGAGA 102 325 2179 Antisense
TGCTGGATGCAATGCTCGCTGTCAA 65 579 2219 Antisense
Sequence Source Affymetrix Proprietary Database