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[176691_at]

Description C45B2.1 /REP_DB=WormBase Gene ID /WP=CE27853 /GB=AAK68245.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 91      4grp_high_8_8 > 37      6grp_highest_nonorm > 94      6grp_total > 94      4grp_total > 42      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 35.9
(-3)
A 		102.7
(3)
P 		63.4
(-0.5)
P 		74.1
(0.4)
P 		67
B 65.9
(2.1)
P 		68.7
(2.6)
P 		71.3
(3)
P 		33.3
(-3)
A 		38
C 62
(-3)
P 		82.5
(3)
P 		73.3
(0.3)
P 		71
(-0.4)
P 		21
avr 54.6
(-3) 		84.6
(3) 		69.3
(-0.1) 		59.5
(-2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1652
1 2 3 4 5 6 range
A 228.1
(-2.5)
P 		94.4
(-3)
P 		236.7
(-2.5)
P 		259.5
(-2.4)
P 		1716.7
(3)
P 		541.6
(-1.3)
P 		1622
B 166.5
(-2.9)
P 		141.6
(-3)
P 		155.5
(-2.9)
P 		224.5
(-2.7)
P 		1746.6
(3)
P 		534.2
(-1.5)
P 		1605
C 199.2
(-2.8)
P 		154
(-2.9)
P 		136.4
(-3)
P 		260.6
(-2.5)
P 		1719.7
(3)
P 		609.5
(-1.2)
P 		1583
avr 197.9
(-2.7) 		130
(-3) 		176.2
(-2.8) 		248.2
(-2.6) 		1727.7
(3) 		561.8
(-1.4) 		1598
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.1
(-1.8)
A 		22.3
(3)
P 		16.6
(0)
P 		10.8
(-3)
P 		12
B 21
(3)
P 		17
(1.3)
P 		16.5
(1.1)
P 		7.1
(-3)
A 		14
C 20.5
(0.8)
P 		23.7
(2.2)
P 		25.6
(3)
P 		12
(-3)
P 		14
avr 18.2
(1.5) 		21
(3) 		19.6
(2.2) 		10
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 676
1 2 3 4 5 6 range
A 42
(-2.9)
P 		33.6
(-3)
P 		51.6
(-2.8)
P 		65.8
(-2.6)
P 		518
(3)
P 		131.9
(-1.8)
P 		484
B 57.9
(-2.8)
P 		47.1
(-2.9)
P 		37.8
(-3)
P 		59.5
(-2.8)
P 		709.6
(3)
P 		199.2
(-1.6)
P 		672
C 73.8
(-2.6)
P 		47
(-2.9)
P 		34.7
(-3)
P 		52.4
(-2.8)
P 		556.5
(3)
P 		204.1
(-1.1)
P 		522
avr 57.9
(-2.8) 		42.6
(-3) 		41.4
(-3) 		59.2
(-2.8) 		594.7
(3) 		178.4
(-1.5) 		553
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17085
Sequence Type Exemplar sequence
Representative Public ID C45B2.1 NCBI
Target Description C45B2.1 /REP_DB=WormBase Gene ID /WP=CE27853 /GB=AAK68245.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076616 NCBI Caenorhabditis elegans C45B2.1 (C45B2.1) mRNA, complete cds. 11/11 None
SNAP00000012825 ENSEMBL cdna:SNAP chromosome:CEL140:X:6086099:6086457:1 11/11 None
GENEFINDER00000012830 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6086099:6088321:1 11/11 None
C45B2.1 ENSEMBL cdna:known chromosome:CEL140:X:6086099:6086520:1 gene:C45B2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6086098-6088321(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45B2.1
Entrez Gene 180878 Entrez gene
SwissProt Q95YC6 EMBL-EBI
WormBase CE27853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68245 Hypothetical protein C45B2.1 [Caenorhabditis elegans] ref|NP_509017.1| C45B2.1 [Caenorhabditis elegans] 8.0E-58
blast AAK68245 Hypothetical protein C45B2.1 [Caenorhabditis elegans] ref|NP_509017.1| C45B2.1 [Caenorhabditis elegans] 1.0E-57
blast CAE68863 Hypothetical protein CBG14826 [Caenorhabditis briggsae] 7.0E-46
blast CAE68863 Hypothetical protein CBG14826 [Caenorhabditis briggsae] 1.0E-45
blast AAK68246 Hypothetical protein C45B2.2 [Caenorhabditis elegans] ref|NP_509016.1| C45B2.2 [Caenorhabditis elegans] 7.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509017.1 1 5-27
C45B2.1 1 5-27
SNAP00000012825 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:176691_AT
tgaactttactgccgttttcctggcgtttgccatgcttttagcaactgtcactgccggac
ctggaaaccgttatggatggccaagttcttatgagagattccttgaaaagcaaggtgtgt
gggattataaccgacacgaggttcgttctgattatggacgtcgtggaaactacgagcgta
atctcaacgatttgtacgatgactggaagaaacaaactcgttggggacaaaatgactaca
gatcaaaccgattccagcaaccatctgcagggtacggacgatacggattcccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTTTACTGCCGTTTTCCTGGC 77 571 14 Antisense
TTTCCTGGCGTTTGCCATGCTTTTA 547 669 30 Antisense
TGCTTTTAGCAACTGTCACTGCCGG 305 579 47 Antisense
TCACTGCCGGACCTGGAAACCGTTA 609 623 62 Antisense
GAAACCGTTATGGATGGCCAAGTTC 455 357 77 Antisense
AACCGACACGAGGTTCGTTCTGATT 146 143 142 Antisense
GGACGTCGTGGAAACTACGAGCGTA 4 525 169 Antisense
ACGAGCGTAATCTCAACGATTTGTA 263 93 185 Antisense
AGATCAAACCGATTCCAGCAACCAT 657 65 253 Antisense
AGCAACCATCTGCAGGGTACGGACG 144 75 269 Antisense
GGTACGGACGATACGGATTCCCAGG 107 503 284 Antisense
Sequence Source Affymetrix Proprietary Database