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[176690_at]

Description ZK353.9 /REP_DB=WormBase Gene ID /WP=CE25685 /GB=AAK68622.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 84      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_highest_nonorm > 63      6grp_total > 75      4grp_total > 10      6grp_highest_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 584
1 2 3 4 range
A 271.9
(-3)
P 		310
(-2.5)
P 		327.2
(-2.3)
P 		766.3
(3)
P 		494
B 267.2
(-3)
P 		426.7
(-1.1)
P 		322.3
(-2.3)
P 		762.2
(3)
P 		495
C 265.6
(-3)
P 		423.1
(-1.4)
P 		281.4
(-2.8)
P 		849.8
(3)
P 		584
avr 268.2
(-3) 		386.6
(-1.6) 		310.3
(-2.5) 		792.8
(3) 		525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 357.6
(-3)
P 		395.2
(-2.5)
P 		609.2
(0.4)
P 		801.1
(3)
P 		570.4
(-0.1)
P 		775.4
(2.7)
P 		444
B 326
(-3)
P 		491.8
(-0.8)
P 		652.8
(1.3)
P 		605.5
(0.7)
P 		599.9
(0.6)
P 		782.6
(3)
P 		457
C 487.8
(-2.3)
P 		438.9
(-3)
P 		529.6
(-1.6)
P 		834.5
(3)
P 		659.4
(0.3)
P 		732.9
(1.5)
P 		396
avr 390.5
(-3) 		442
(-2.2) 		597.2
(0.3) 		747
(2.7) 		609.9
(0.5) 		763.6
(3) 		373
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 99
(1.2)
P 		67.3
(-3)
P 		85.5
(-0.6)
P 		112.2
(3)
P 		45
B 85.2
(-2.3)
P 		105.4
(-0.9)
P 		74.7
(-3)
P 		162.4
(3)
P 		88
C 87.9
(-3)
P 		121.6
(0.6)
P 		98.1
(-1.9)
P 		143.3
(3)
P 		55
avr 90.7
(-2.5) 		98.1
(-1.6) 		86.1
(-3) 		139.3
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 65.9
(-3)
P 		140.6
(0.3)
P 		132.7
(-0.1)
P 		203.2
(3)
P 		172.1
(1.6)
P 		188.8
(2.4)
P 		137
B 113.4
(-3)
P 		163.7
(-1.3)
P 		158.5
(-1.5)
P 		160.4
(-1.4)
P 		243.7
(1.4)
P 		291.8
(3)
P 		178
C 180.8
(-0.5)
P 		133.9
(-3)
P 		134.8
(-3)
P 		167.8
(-1.2)
P 		213.4
(1.3)
P 		245.3
(3)
P 		111
avr 120
(-3) 		146.1
(-1.7) 		142
(-1.9) 		177.1
(-0.2) 		209.7
(1.4) 		242
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7373
Sequence Type Exemplar sequence
Representative Public ID ZK353.9 NCBI
Target Description ZK353.9 /REP_DB=WormBase Gene ID /WP=CE25685 /GB=AAK68622.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066458 NCBI Caenorhabditis elegans ZK353.9 (ZK353.9) mRNA, complete cds. 11/11 None
SNAP00000044099 ENSEMBL cdna:SNAP chromosome:CEL140:III:8409411:8411766:1 11/11 None
GENEFINDER00000044105 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8409411:8411766:1 11/11 None
ZK353.9 ENSEMBL cdna:known chromosome:CEL140:III:8409411:8411912:1 gene:ZK353.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8409406-8411762(+) 98.56 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK353.9
Entrez Gene 191290 Entrez gene
SwissProt Q95ZI6 EMBL-EBI
WormBase CE25685 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:266848_AT expressed protein at
CANINE:1583741_AT similar to thioredoxin family Trp26 cfa
CANINE_2:CFA.11009.1.A1_AT similar to thioredoxin family Trp26 cfa
CANINE_2:CFAAFFX.20441.1.S1_S_AT similar to thioredoxin family Trp26 cfa
DROSGENOME1:142102_AT dm
DROSOPHILA_2:1641465_AT dm
DROSGENOME1:153356_AT dm
CHICKEN:GGA.7961.2.S1_A_AT similar to thioredoxin family Trp26 gga
HG-U133B:223124_S_AT chromosome 1 open reading frame 128 hs
HG-U133_PLUS_2:223124_S_AT chromosome 1 open reading frame 128 hs
HU35KSUBA:AA247643_AT chromosome 1 open reading frame 128 hs
HU35KSUBB:RC_N69644_AT chromosome 1 open reading frame 128 hs
HU35KSUBC:RC_T55236_AT chromosome 1 open reading frame 128 hs
U133_X3P:G12006224_3P_A_AT chromosome 1 open reading frame 128 hs
U133_X3P:HS.31819.0.S1_3P_A_AT chromosome 1 open reading frame 128 hs
HG-U133_PLUS_2:223123_S_AT chromosome 1 open reading frame 128 hs
HG-U133B:223123_S_AT chromosome 1 open reading frame 128 hs
HG-U95B:58533_AT chromosome 1 open reading frame 128 hs
HG-U95E:91143_R_AT chromosome 1 open reading frame 128 hs
HG-U133_PLUS_2:229856_S_AT Chromosome 1 open reading frame 128 hs
HG-U133B:229856_S_AT Chromosome 1 open reading frame 128 hs
HG-U95C:49789_AT Chromosome 1 open reading frame 128 hs
U133_X3P:HS.31819.1.A1_3P_A_AT Chromosome 1 open reading frame 128 hs
MOE430A:1428675_AT RIKEN cDNA 1110049F12 gene mm
MOUSE430A_2:1428675_AT RIKEN cDNA 1110049F12 gene mm
MOUSE430_2:1428675_AT RIKEN cDNA 1110049F12 gene mm
MG-U74AV2:161424_F_AT RIKEN cDNA 1110049F12 gene mm
MG-U74AV2:160329_AT RIKEN cDNA 1110049F12 gene mm
MOE430A:1437233_X_AT RIKEN cDNA 1110049F12 gene mm
MOUSE430A_2:1437233_X_AT RIKEN cDNA 1110049F12 gene mm
MOUSE430_2:1437233_X_AT RIKEN cDNA 1110049F12 gene mm
MOUSE430_2:1455974_AT RIKEN cDNA 1110049F12 gene (1110049F12Rik), mRNA mm
MOE430A:1455974_AT RIKEN cDNA 1110049F12 gene (1110049F12Rik), mRNA mm
MOUSE430A_2:1455974_AT RIKEN cDNA 1110049F12 gene (1110049F12Rik), mRNA mm
MU19KSUBB:TC26620_AT RIKEN cDNA 1110049F12 gene (1110049F12Rik), mRNA mm
MU11KSUBB:W08677_AT RIKEN cDNA 1110049F12 gene (1110049F12Rik), mRNA mm
RG-U34B:RC_AA850529_AT similar to HT014 (predicted) rn
RAE230A:1374554_AT similar to HT014 (predicted) rn
RAT230_2:1374554_AT similar to HT014 (predicted) rn
RAE230A:1375354_AT Similar to HT014 (predicted) rn
RAT230_2:1375354_AT Similar to HT014 (predicted) rn
RAE230B:1397597_AT Similar to HT014 (predicted) rn
RAT230_2:1397597_AT Similar to HT014 (predicted) rn
RG-U34B:RC_AA964241_AT Similar to HT014 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK68622 Hypothetical protein ZK353.9 [Caenorhabditis elegans] ref|NP_498859.1| ZK353.9 [Caenorhabditis elegans] sp|Q95ZI6|YOJ9_CAEEL Hypothetical protein ZK353.9 in chromosome III 1.0E-119
blast S44654 ZK353.1 protein - Caenorhabditis elegans 1.0E-119
blast CAE71261 Hypothetical protein CBG18143 [Caenorhabditis briggsae] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR010400 EMBL-EBI Protein of unknown function DUF1000 1.9E-85
Sequence
Target Sequence 
>C. ELEGANS:176690_AT
gtgttcacatggtcattctcacaattgtgccgcagagcacattccagaagttccaggtga
tgacgtgtatcgctacgatatggtcagctatattgacatggaaaaggtaactactctcaa
cgagtcagtcgacggcgccggaaagaaggttttcaaggtgatggaaaaaagagatgacag
attggaatacgtagaaagtgattgcgatcacgagttgctattcaatattccattcaccgg
acacgttcgtctaacgggtctctcgataatcggagacgaagatggatcacatccagccaa
aattcgattgttcaaagatcgagaggcaatgtcatttgatgactgtagtattgaggcaga
tcaggaaattgatttgaaacaagatccacaaggactcgtggattatccgttgaaagcttc
aaagtttggaaatattcataatctatcgattttggtagatgcaaactttggagaagatga
gacaaagatctactatatcggattacgtggagaatttcagcacgagttcagacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCACATGGTCATTCTCACAAT 632 485 15 Antisense
GTCATTCTCACAATTGTGCCGCAGA 619 467 26 Antisense
CGCAGAGCACATTCCAGAAGTTCCA 127 255 45 Antisense
GTTCCAGGTGATGACGTGTATCGCT 396 441 64 Antisense
CTCTCAACGAGTCAGTCGACGGCGC 158 223 128 Antisense
GATTGCGATCACGAGTTGCTATTCA 5 435 214 Antisense
AATATTCCATTCACCGGACACGTTC 630 173 238 Antisense
GTCTAACGGGTCTCTCGATAATCGG 183 447 263 Antisense
GGATCACATCCAGCCAAAATTCGAT 84 511 298 Antisense
ACAAGGACTCGTGGATTATCCGTTG 39 113 402 Antisense
GAATTTCAGCACGAGTTCAGACAAA 652 325 526 Antisense
Sequence Source Affymetrix Proprietary Database