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[176689_at]

Description F35B3.1 /REP_DB=WormBase Gene ID /WP=CE07168 /GB=AAK68372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 13.1
(-2.7)
A 		9.2
(-3)
A 		53.9
(0.2)
A 		92.1
(3)
A 		83
B 55
(3)
A 		45.8
(1.7)
A 		35.4
(0.3)
A 		12
(-3)
A 		43
C 7.2
(-2.9)
A 		6.5
(-2.9)
A 		5.7
(-3)
A 		76
(3)
A 		70
avr 25.1
(-2.3) 		20.5
(-3) 		31.7
(-1.3) 		60
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 43.3
(3)
A 		30.9
(1)
A 		34.4
(1.6)
A 		5.6
(-3)
A 		26.7
(0.4)
A 		10.5
(-2.2)
A 		38
B 34.2
(2)
A 		8.8
(-3)
A 		11.6
(-2.4)
A 		24.5
(0.1)
A 		39.3
(3)
A 		11.5
(-2.5)
A 		31
C 23.5
(-0.4)
A 		12.1
(-2.8)
A 		39.5
(3)
A 		31.9
(1.4)
A 		11
(-3)
A 		31.4
(1.3)
A 		29
avr 33.7
(3) 		17.3
(-3) 		28.5
(1.1) 		20.7
(-1.8) 		25.7
(0.1) 		17.8
(-2.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(-1.6)
A 		2
(-3)
A 		14.1
(3)
A 		13.5
(2.7)
A 		12
B 17.5
(3)
A 		11.3
(0.5)
A 		8.2
(-0.7)
A 		2.6
(-3)
A 		15
C 2.4
(-2.7)
A 		1.9
(-3)
A 		2
(-2.9)
A 		12.8
(3)
A 		11
avr 8.2
(1.1) 		5.1
(-3) 		8.1
(1) 		9.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8
(1.1)
A 		11
(3)
A 		7.5
(0.8)
A 		1.4
(-3)
A 		8.1
(1.2)
A 		2.6
(-2.3)
A 		10
B 11.9
(1.1)
A 		2.9
(-3)
A 		2.8
(-3)
A 		6.5
(-1.3)
A 		16
(3)
A 		4.3
(-2.3)
A 		13
C 8.7
(1.4)
A 		3.7
(-2.9)
A 		10.1
(2.7)
A 		6.4
(-0.6)
A 		3.6
(-3)
A 		10.5
(3)
A 		7
avr 9.5
(3) 		5.9
(-1.6) 		6.8
(-0.4) 		4.8
(-3) 		9.2
(2.6) 		5.8
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17782
Sequence Type Exemplar sequence
Representative Public ID F35B3.1 NCBI
Target Description F35B3.1 /REP_DB=WormBase Gene ID /WP=CE07168 /GB=AAK68372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078348 NCBI Caenorhabditis elegans F35B3.1 (F35B3.1) mRNA, complete cds. 11/11 None
SNAP00000019165 ENSEMBL cdna:SNAP chromosome:CEL140:X:17013375:17017727:1 11/11 None
GENEFINDER00000019172 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17013375:17017727:1 11/11 None
F35B3.1 ENSEMBL cdna:known chromosome:CEL140:X:17015210:17017727:1 gene:F35B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17015209-17017727(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35B3.1
Entrez Gene 185252 Entrez gene
SwissProt Q966K0 EMBL-EBI
WormBase CE07168 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68372 Hypothetical protein F35B3.1 [Caenorhabditis elegans] ref|NP_510749.1| F35B3.1 [Caenorhabditis elegans] 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast CAE69704 Hypothetical protein CBG15971 [Caenorhabditis briggsae] 5.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:176689_AT
acaaaaccgtctgccacgagtgtggcaaatgcagagaaataaatgataaaagtcctagag
ttcaactgagatgcccagatcttgagattacagctgcgaacattgagtccatgctggcgg
taactggaaatgaaatcgttacgtgggagcatgacggatgtgaaaacacgacatgtagag
aaaccactagatacgaatttcctgatgtcatcctcgtctccgtggacactttccaagatg
gcaatagacatatcggaaaggagctggagttctttccaactgaagatttttcaccaattt
cggtaaacaacgacgagcctgacatatttcaccttggtggtgtcatctacttcagaacgt
tcaattgttttcgcgatgagagcagcggtcactatatggcacgtgtttatcatcacggga
atgtgtttctggcggatgacaacagaatttacgagcagaacatcaacagaccaacggaac
cagccaactcggttccatattttgcgttctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAACCGTCTGCCACGAGTGTGG 54 111 437 Antisense
TTACAGCTGCGAACATTGAGTCCAT 633 683 524 Antisense
TTGAGTCCATGCTGGCGGTAACTGG 155 683 539 Antisense
CGAATTTCCTGATGTCATCCTCGTC 593 253 630 Antisense
GTCTCCGTGGACACTTTCCAAGATG 223 471 652 Antisense
GGAGCTGGAGTTCTTTCCAACTGAA 512 519 696 Antisense
CGAGCCTGACATATTTCACCTTGGT 450 251 750 Antisense
ACCTTGGTGGTGTCATCTACTTCAG 248 85 767 Antisense
GAGCAGCGGTCACTATATGGCACGT 359 389 816 Antisense
TCAACAGACCAACGGAACCAGCCAA 620 627 899 Antisense
CTCGGTTCCATATTTTGCGTTCTAC 368 231 924 Antisense
Sequence Source Affymetrix Proprietary Database