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[176688_at] 7TM chemoreceptor, srw family

Description F18E3.8 /REP_DB=WormBase Gene ID /WP=CE09466 /GB=AAK18932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 17      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 5.8
(-3)
A 		54.3
(0.3)
A 		36.1
(-0.9)
A 		93.3
(3)
P 		88
B 20.4
(-3)
A 		42
(-1.1)
A 		31.5
(-2)
A 		90.2
(3)
P 		70
C 15.2
(-3)
A 		61.6
(-1)
A 		22
(-2.7)
A 		156.1
(3)
P 		141
avr 13.8
(-3) 		52.6
(-0.7) 		29.9
(-2) 		113.2
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 7.1
(-3)
A 		33.5
(3)
A 		14.1
(-1.4)
A 		7.2
(-3)
A 		28
(1.8)
A 		20.3
(0)
A 		26
B 18.5
(-0.1)
A 		18.4
(-0.1)
A 		30.6
(1.9)
A 		37.1
(3)
A 		11.5
(-1.3)
A 		1.2
(-3)
A 		36
C 3.1
(-3)
A 		47.2
(3)
A 		12.5
(-1.7)
A 		46.8
(2.9)
A 		26.3
(0.2)
A 		22
(-0.4)
A 		44
avr 9.6
(-3) 		33
(3) 		19.1
(-0.6) 		30.4
(2.3) 		21.9
(0.2) 		14.5
(-1.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.1
(-3)
A 		11.8
(2)
A 		9.4
(0.8)
A 		13.7
(3)
P 		12
B 6.5
(-3)
A 		10.4
(-1.2)
A 		7.3
(-2.6)
A 		19.2
(3)
P 		13
C 5
(-3)
A 		17.7
(0.6)
A 		7.7
(-2.2)
A 		26.3
(3)
P 		21
avr 4.5
(-3) 		13.3
(0.5) 		8.1
(-1.6) 		19.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.3
(-3)
A 		11.9
(3)
A 		3.1
(-2)
A 		1.8
(-2.7)
A 		8.4
(1)
A 		5
(-0.9)
A 		11
B 6.4
(0.8)
A 		6.1
(0.6)
A 		7.4
(1.5)
A 		9.8
(3)
A 		4.7
(-0.3)
A 		0.5
(-3)
A 		9
C 1.1
(-3)
A 		14.4
(3)
A 		3.2
(-2.1)
A 		9.4
(0.7)
A 		8.5
(0.3)
A 		7.3
(-0.2)
A 		13
avr 2.9
(-3) 		10.8
(3) 		4.6
(-1.7) 		7
(0.1) 		7.2
(0.3) 		4.3
(-1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12306
Sequence Type Exemplar sequence
Representative Public ID F18E3.8 NCBI
Target Description F18E3.8 /REP_DB=WormBase Gene ID /WP=CE09466 /GB=AAK18932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072499
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000036725 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7420252:7422555:1 None
NM_072499 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-67) (srw-67) mRNA, complete cds. None
F18E3.2 ENSEMBL cdna:known chromosome:CEL140:V:7420252:7422420:1 gene:F18E3.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7421792-7422556(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-67
Ensembl F18E3.2
Entrez Gene 184639 Entrez gene
SwissProt Q19558 EMBL-EBI
WormBase CE33922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504900 Serpentine Receptor, class W family member (srw-67) [Caenorhabditis elegans] gb|AAK18931.2| Serpentine receptor, class w protein 67 [Caenorhabditis elegans] 0.0
blast NP_504900 Serpentine Receptor, class W family member (srw-67) [Caenorhabditis elegans] gb|AAK18931.2| Serpentine receptor, class w protein 67 [Caenorhabditis elegans] 1.0E-172
blast CAE71070 Hypothetical protein CBG17914 [Caenorhabditis briggsae] 2.0E-86
blast CAE70403 Hypothetical protein CBG16973 [Caenorhabditis briggsae] 3.0E-79
blast CAE71070 Hypothetical protein CBG17914 [Caenorhabditis briggsae] 4.0E-70
blast CAE70403 Hypothetical protein CBG16973 [Caenorhabditis briggsae] 1.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504900.2 5 35-57,69-91,157-179,281-303,318-340
F18E3.2 5 35-57,69-91,157-179,281-303,318-340
GENEFINDER00000036725 3 35-57,69-91,157-179
Sequence
Target Sequence 
>C. ELEGANS:176688_AT
aactagagacaatacctgctgcaattcttccaactctaacagttcttctgattagagaac
tcaaggtcgccagtgactcaaaacggaaaatctcagtggcaatgagaaaaggcaatgaaa
attcaaaaactgaccatactacaaagatggtaatcctaatgacaatatgctttatgtctg
ctgaaggccctatgggtatttgtacggttgttcaaggttttgtggttgaaaaatctggat
atctcggaatcacatttgatctagtggtcatttttgggttattcgtcacaataaatgcaa
tttctcattgcttaatttgccttgccgtgtctactcaatatcggaaatattactgtgagt
gcaaaaacaagtgtgaccagctcaaatgcatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTAGAGACAATACCTGCTGCAAT 119 139 53 Antisense
AATACCTGCTGCAATTCTTCCAACT 336 173 63 Antisense
TCTTCCAACTCTAACAGTTCTTCTG 200 619 78 Antisense
GAGAACTCAAGGTCGCCAGTGACTC 602 391 107 Antisense
GCTTTATGTCTGCTGAAGGCCCTAT 48 305 221 Antisense
GGCCCTATGGGTATTTGTACGGTTG 356 287 238 Antisense
GGATATCTCGGAATCACATTTGATC 102 511 289 Antisense
GGTCATTTTTGGGTTATTCGTCACA 536 503 318 Antisense
TCATTGCTTAATTTGCCTTGCCGTG 478 617 357 Antisense
CCTTGCCGTGTCTACTCAATATCGG 547 269 372 Antisense
AAGTGTGACCAGCTCAAATGCATTA 397 157 421 Antisense
Sequence Source Affymetrix Proprietary Database