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[176687_at]

Description C45B2.3 /REP_DB=WormBase Gene ID /WP=CE02553 /GB=AAK68247.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 32      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 2.6
(-3)
A 		13.3
(-1.5)
A 		37.5
(1.9)
A 		45.6
(3)
A 		43
B 19.4
(-3)
A 		21.1
(-2.8)
A 		63.4
(3)
A 		24.1
(-2.4)
A 		44
C 1.9
(-3)
A 		24.7
(3)
A 		16.8
(0.9)
A 		22.8
(2.5)
A 		23
avr 8
(-3) 		19.7
(-0.8) 		39.2
(3) 		30.8
(1.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 140.9
(3)
P 		27.8
(-1.9)
A 		47.5
(-1)
A 		32.4
(-1.7)
A 		56.5
(-0.6)
A 		1.8
(-3)
A 		139
B 148.2
(3)
P 		43.9
(-1.4)
A 		53.4
(-1)
A 		6.8
(-3)
A 		26.4
(-2.2)
A 		8.8
(-2.9)
A 		141
C 219.5
(3)
P 		70.7
(-1.1)
A 		6.8
(-2.9)
A 		9.9
(-2.8)
A 		21.1
(-2.5)
A 		4
(-3)
A 		216
avr 169.5
(3) 		47.5
(-1.4) 		35.9
(-1.9) 		16.4
(-2.6) 		34.7
(-1.9) 		4.9
(-3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1
(-3)
A 		2.9
(-1.7)
A 		9.8
(3)
A 		6.7
(0.9)
A 		9
B 6.2
(-2.3)
A 		5.2
(-2.9)
A 		14.7
(3)
A 		5.1
(-3)
A 		10
C 0.6
(-3)
A 		7.1
(3)
A 		5.9
(1.9)
A 		3.8
(-0)
A 		7
avr 2.6
(-3) 		5.1
(-1) 		10.1
(3) 		5.2
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 26
(3)
P 		9.9
(-0.8)
A 		10.3
(-0.7)
A 		8.2
(-1.2)
A 		17
(0.9)
A 		0.4
(-3)
A 		26
B 51.6
(3)
P 		14.6
(-1.5)
A 		13
(-1.7)
A 		1.8
(-3)
A 		10.7
(-1.9)
A 		3.3
(-2.8)
A 		50
C 81.4
(3)
P 		21.6
(-1.5)
A 		1.7
(-3)
A 		2
(-2.9)
A 		6.8
(-2.6)
A 		1.3
(-3)
A 		80
avr 53
(3) 		15.4
(-1.4) 		8.3
(-2.2) 		4
(-2.7) 		11.5
(-1.9) 		1.7
(-3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16832
Sequence Type Exemplar sequence
Representative Public ID C45B2.3 NCBI
Target Description C45B2.3 /REP_DB=WormBase Gene ID /WP=CE02553 /GB=AAK68247.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076614 NCBI Caenorhabditis elegans C45B2.3 (C45B2.3) mRNA, complete cds. 11/11 None
SNAP00000012823 ENSEMBL cdna:SNAP chromosome:CEL140:X:6082918:6083291:1 11/11 None
GENEFINDER00000012828 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6082918:6083291:1 11/11 None
C45B2.3 ENSEMBL cdna:known chromosome:CEL140:X:6082918:6083291:1 gene:C45B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6082917-6083291(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45B2.3
Entrez Gene 183467 Entrez gene
SwissProt Q95YC8 EMBL-EBI
WormBase CE02553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68247 Hypothetical protein C45B2.3 [Caenorhabditis elegans] ref|NP_509015.1| C45B2.3 [Caenorhabditis elegans] 2.0E-51
blast CAE68861 Hypothetical protein CBG14824 [Caenorhabditis briggsae] 7.0E-41
blast CAE68862 Hypothetical protein CBG14825 [Caenorhabditis briggsae] 9.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509015.1 1 7-29
C45B2.3 1 7-29
SNAP00000012823 1 7-29
GENEFINDER00000012828 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:176687_AT
tgtcatcaaacgatcatttcttcgttatgaacactttcggacttcttctggctctagccg
tcctcttcgcttctgttgaagctgcaaaccgttacggttggccagactcgtacgagagat
tccttgagagacaaggagtctgggactttaagaaacacgaagtgaaatcttcctacagaa
cacgcaagagctacgaacgtgacctcaaggaccttttcgatgactggaagaaacaaacta
gatggggacaaaaggactacagatccaacaaataccaagcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCATCAAACGATCATTTCTTCGT 166 559 14 Antisense
GTCCTCTTCGCTTCTGTTGAAGCTG 246 477 73 Antisense
GTTGAAGCTGCAAACCGTTACGGTT 54 423 88 Antisense
CGTTACGGTTGGCCAGACTCGTACG 222 247 103 Antisense
GGCCAGACTCGTACGAGAGATTCCT 26 545 113 Antisense
GGAGTCTGGGACTTTAAGAAACACG 612 511 148 Antisense
GAAATCTTCCTACAGAACACGCAAG 167 363 177 Antisense
ACGCAAGAGCTACGAACGTGACCTC 704 91 195 Antisense
GAACGTGACCTCAAGGACCTTTTCG 227 347 208 Antisense
AGGACCTTTTCGATGACTGGAAGAA 62 41 221 Antisense
AGATCCAACAAATACCAAGCACCAA 532 65 274 Antisense
Sequence Source Affymetrix Proprietary Database