[Home] | [Total List]

[176685_at]

Description C09E7.2 /REP_DB=WormBase Gene ID /WP=CE25767 /GB=AAK68172.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 0      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 25.7
(0.3)
A 		2.9
(-3)
A 		44.2
(3)
A 		40.2
(2.4)
A 		41
B 45
(1.9)
A 		22.9
(-3)
A 		38.7
(0.5)
A 		49.8
(3)
M 		27
C 17.5
(-1.8)
A 		9.7
(-3)
A 		10.2
(-2.9)
A 		50.1
(3)
A 		40
avr 29.4
(0) 		11.8
(-3) 		31
(0.3) 		46.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 12.2
(-2.1)
A 		1.7
(-3)
A 		69.1
(3)
A 		19.1
(-1.5)
A 		21.2
(-1.3)
A 		16
(-1.7)
A 		67
B 39.4
(2.4)
A 		42.7
(2.9)
A 		43.3
(3)
A 		2.6
(-3)
A 		19.6
(-0.5)
A 		14
(-1.3)
A 		41
C 26.1
(0.3)
A 		4.4
(-3)
A 		44
(3)
A 		15.4
(-1.3)
A 		10.6
(-2.1)
A 		29.8
(0.8)
A 		40
avr 25.9
(-1) 		16.3
(-2.4) 		52.1
(3) 		12.4
(-3) 		17.1
(-2.3) 		19.9
(-1.9) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.4
(1.8)
A 		0.6
(-3)
A 		11.6
(3)
A 		5.9
(-0.1)
A 		11
B 14.3
(3)
A 		5.7
(-3)
A 		9
(-0.7)
A 		10.6
(0.4)
M 		9
C 5.8
(0.2)
A 		2.8
(-3)
A 		3.6
(-2.2)
A 		8.5
(3)
A 		6
avr 9.8
(3) 		3
(-3) 		8.1
(1.5) 		8.3
(1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		0.6
(-3)
A 		15.1
(3)
A 		4.8
(-1.3)
A 		6.4
(-0.6)
A 		3.9
(-1.6)
A 		15
B 13.7
(2.8)
A 		14.2
(3)
A 		10.5
(1.4)
A 		0.7
(-3)
A 		8
(0.2)
A 		5.2
(-1)
A 		14
C 9.7
(2.1)
A 		1.3
(-3)
A 		11.2
(3)
A 		3.1
(-1.9)
A 		3.4
(-1.7)
A 		10
(2.3)
A 		10
avr 8.6
(0.6) 		5.4
(-1.4) 		12.3
(3) 		2.9
(-3) 		5.9
(-1.1) 		6.4
(-0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7789
Sequence Type Exemplar sequence
Representative Public ID C09E7.2 NCBI
Target Description C09E7.2 /REP_DB=WormBase Gene ID /WP=CE25767 /GB=AAK68172.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066039 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-10) (pqn-10) mRNA, complete cds. 11/11 None
C09E7.2 ENSEMBL cdna:known chromosome:CEL140:III:6528160:6531957:1 gene:C09E7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042858 8/11 Cross Hyb Matching Probes None
SNAP00000042845 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6528158-6531956(+) 91.44 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-10
Ensembl C09E7.2
Entrez Gene 182449 Entrez gene
SwissProt Q95YE5 EMBL-EBI
WormBase CE25767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68172 Prion-like-(q/n-rich)-domain-bearing protein protein 10 [Caenorhabditis elegans] ref|NP_498440.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-10) [Caenorhabditis elegans] 1.0E-157
blast CAE66486 Hypothetical protein CBG11766 [Caenorhabditis briggsae] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498440.1 1 7-29
C09E7.2 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:176685_AT
ggcgattgccaacaagtcattctcattgtcttccatcttgacttgccatctttcaattcg
gtttctcttcgtttaatcttaattcaactccaaatttacgacaaaatggcttccattaaa
aggcttccaataattgaaagcactgagagacaagtgaaaactctagctttcttgctcgaa
atcgaagaccaacaagcatcccagattgccgttgacactttgcttcatttctacgttttt
aaattgcatagggatgaaggcgatttggaggttgccgagttatcaaccccaacgaaggaa
gattacagcaaggcttactggcaacttttcgaatgccagtggcatttgctttcaagtgaa
catcaggatgctgaagagtttacaagaccactggagataataagaaaatggcactccgta
ccacataccccaatgccaacaacagaaacattcaatgagatgagtgatggggaacgaaga
agatttaatattgatcgtgaaaagagaaagaaggcttctagaagactcatctttctccca
aaacagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGATTGCCAACAAGTCATTCTCA 498 541 646 Antisense
TCATTGTCTTCCATCTTGACTTGCC 478 619 668 Antisense
GCCATCTTTCAATTCGGTTTCTCTT 598 279 690 Antisense
GAAAACTCTAGCTTTCTTGCTCGAA 315 355 801 Antisense
ATCGAAGACCAACAAGCATCCCAGA 601 35 826 Antisense
CAGATTGCCGTTGACACTTTGCTTC 123 207 847 Antisense
CACTTTGCTTCATTTCTACGTTTTT 596 197 861 Antisense
GGTTGCCGAGTTATCAACCCCAACG 571 503 915 Antisense
GCAAGGCTTACTGGCAACTTTTCGA 240 321 953 Antisense
ATGCCAGTGGCATTTGCTTTCAAGT 461 41 978 Antisense
GACTCATCTTTCTCCCAAAACAGGA 168 373 1169 Antisense
Sequence Source Affymetrix Proprietary Database