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[176684_s_at]

Description B0207.5 /REP_DB=WormBase Gene ID /WP=CE23496 /GB=AAK68667.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 20.3
(3)
A 		5.2
(-2.5)
A 		3.7
(-3)
A 		11.7
(-0.1)
A 		17
B 23.6
(1.8)
A 		7.2
(-3)
A 		27.9
(3)
A 		20
(0.7)
A 		21
C 23.5
(-0.5)
A 		21.4
(-0.7)
A 		3.2
(-3)
A 		51
(3)
A 		48
avr 22.5
(1.1) 		11.3
(-3) 		11.6
(-2.9) 		27.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 32.2
(2.2)
A 		13.3
(-1.3)
A 		36.6
(3)
A 		4
(-3)
A 		27.9
(1.4)
A 		15.9
(-0.8)
A 		33
B 13.1
(0.1)
A 		24.4
(3)
A 		20.5
(2)
A 		22.3
(2.5)
A 		1.4
(-3)
A 		2.5
(-2.7)
A 		23
C 18.8
(3)
A 		7.3
(-1)
A 		1.6
(-3)
A 		17.3
(2.5)
A 		2.2
(-2.8)
A 		17.4
(2.5)
A 		17
avr 21.4
(3) 		15
(-0.5) 		19.6
(2) 		14.5
(-0.8) 		10.5
(-3) 		11.9
(-2.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.4
(3)
A 		1.1
(-2.9)
A 		1
(-3)
A 		1.7
(-2.3)
A 		6
B 7.5
(3)
A 		1.8
(-3)
A 		6.5
(1.9)
A 		4.3
(-0.4)
A 		6
C 7.8
(2.4)
A 		6.1
(1)
A 		1.1
(-3)
A 		8.6
(3)
A 		8
avr 7.6
(3) 		3
(-2.9) 		2.9
(-3) 		4.9
(-0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.9
(1)
A 		4.7
(0)
A 		8
(2.7)
A 		1
(-3)
A 		8.4
(3)
A 		3.9
(-0.6)
A 		7
B 4.6
(0.2)
A 		8.1
(3)
A 		5
(0.5)
A 		5.9
(1.2)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		8
C 7
(3)
A 		2.2
(-1.4)
A 		0.4
(-3)
A 		3.5
(-0.2)
A 		0.7
(-2.7)
A 		5.8
(1.9)
A 		7
avr 5.8
(3) 		5
(1.2) 		4.5
(0) 		3.5
(-2.3) 		3.2
(-3) 		3.5
(-2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.545
Sequence Type Exemplar sequence
Representative Public ID B0207.5 NCBI
Target Description B0207.5 /REP_DB=WormBase Gene ID /WP=CE23496 /GB=AAK68667.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059311 NCBI Caenorhabditis elegans B0207.5 (B0207.5) mRNA, complete cds. 11/11 None
SNAP00000009165 ENSEMBL cdna:SNAP chromosome:CEL140:I:5927278:5943483:1 10/11 None
GENEFINDER00000009185 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5927326:5943483:1 10/11 None
B0207.5 ENSEMBL cdna:known chromosome:CEL140:I:5929376:5943551:1 gene:B0207.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5927189-5943483(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0207.5
Entrez Gene 172266 Entrez gene
SwissProt Q9N4B9 EMBL-EBI
WormBase CE32093 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68667 Hypothetical protein B0207.5 [Caenorhabditis elegans] ref|NP_491712.2| B0207.5 [Caenorhabditis elegans] 0.0
blast CAE60422 Hypothetical protein CBG04028 [Caenorhabditis briggsae] 0.0
blast AAC24256 Human xnp gene related protein 1 [Caenorhabditis elegans] ref|NP_001020958.1| B0041.7 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:176684_S_AT
ctttcatccgatggcgaaggagatggaaaaatgatttggtccaagaaaactagaagatca
tatactattgataaggatggaaatcggaaactcgtgaaggaagaaaaagtgccaggtggt
cctatggaagatgatggtcaaaaactgatgggaactaaaaagacaaaacgattctataaa
atggtggatggaaagcggaagctgatgaaaacagaaacatcggatggtgataacatgatg
atgcccaaacacaactcaactccagaaaacgacggagttccacctcctggaggtcatttc
tcagttgacaaatcttcagatgacaacaacaaagatcatggagattcaagagaaagatca
ggaagtgatgaagagacgagaacgaggaataaaggaactaataaaaggcgagatggcaga
aatgatggcagaaatatgaatcttggaagcataataaaaccacgaaggaggtcatctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCATCCGATGGCGAAGGAGATG 199 223 10474 Antisense
AAGGATGGAAATCGGAAACTCGTGA 112 159 10546 Antisense
AAAAGTGCCAGGTGGTCCTATGGAA 339 131 10578 Antisense
GGTCCTATGGAAGATGATGGTCAAA 201 503 10591 Antisense
AATGGTGGATGGAAAGCGGAAGCTG 560 157 10653 Antisense
GGATGGTGATAACATGATGATGCCC 386 515 10695 Antisense
GATGATGCCCAAACACAACTCAACT 411 411 10710 Antisense
CACAACTCAACTCCAGAAAACGACG 412 107 10723 Antisense
GGAGTTCCACCTCCTGGAGGTCATT 609 515 10747 Antisense
ACCTCCTGGAGGTCATTTCTCAGTT 96 87 10755 Antisense
AAAACCACGAAGGAGGTCATCTAAT 521 129 10929 Antisense
Sequence Source Affymetrix Proprietary Database