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[176683_at]

Description C18B2.2 /REP_DB=WormBase Gene ID /WP=CE04041 /GB=AAK39173.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 22.1
(-1.4)
A 		5.6
(-3)
A 		47.5
(1.1)
A 		67.1
(3)
A 		62
B 27.5
(-0.7)
A 		9.2
(-2.4)
A 		3.3
(-3)
A 		65.8
(3)
A 		63
C 5
(-3)
A 		28.6
(3)
A 		13.2
(-0.9)
A 		11.5
(-1.3)
A 		24
avr 18.2
(-2.3) 		14.5
(-3) 		21.3
(-1.8) 		48.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 13.5
(3)
A 		3.6
(-3)
A 		10.6
(1.2)
A 		10
(0.9)
A 		10
(0.9)
A 		5.2
(-2)
A 		10
B 59.1
(3)
A 		41.8
(1)
A 		13
(-2.4)
A 		8.8
(-2.9)
A 		8.3
(-3)
A 		22
(-1.4)
A 		51
C 27
(3)
A 		3.6
(-2.7)
A 		5.9
(-2.1)
A 		8.5
(-1.5)
A 		2.3
(-3)
A 		7.6
(-1.7)
A 		25
avr 33.2
(3) 		16.3
(-0.9) 		9.8
(-2.3) 		9.1
(-2.5) 		6.9
(-3) 		11.6
(-1.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8
(0.6)
A 		1.2
(-3)
A 		12.4
(3)
A 		9.8
(1.6)
A 		11
B 8.8
(0.6)
A 		2.3
(-2.3)
A 		0.8
(-3)
A 		14
(3)
A 		13
C 1.7
(-3)
A 		8.2
(3)
A 		4.6
(-0.3)
A 		1.9
(-2.8)
A 		7
avr 6.2
(-0.1) 		3.9
(-3) 		5.9
(-0.4) 		8.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.5
(1.2)
A 		1.3
(-3)
A 		2.3
(0.5)
A 		2.5
(1.2)
A 		3
(3)
A 		1.3
(-3)
A 		2
B 20.6
(3)
A 		13.9
(0.8)
A 		3.1
(-2.7)
A 		2.3
(-3)
A 		3.4
(-2.6)
A 		8.2
(-1.1)
A 		18
C 10
(3)
A 		1.1
(-2.8)
A 		1.5
(-2.5)
A 		1.7
(-2.4)
A 		0.8
(-3)
A 		2.5
(-1.9)
A 		9
avr 11
(3) 		5.4
(-0.8) 		2.3
(-2.9) 		2.2
(-3) 		2.4
(-2.9) 		4
(-1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18195
Sequence Type Exemplar sequence
Representative Public ID C18B2.2 NCBI
Target Description C18B2.2 /REP_DB=WormBase Gene ID /WP=CE04041 /GB=AAK39173.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076222 NCBI Caenorhabditis elegans C18B2.2 (C18B2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016054 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3623903:3628076:1 11/11 None
C18B2.2 ENSEMBL cdna:known chromosome:CEL140:X:3623509:3628346:1 gene:C18B2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016052 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3623903-3625847(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B2.2
Entrez Gene 182766 Entrez gene
SwissProt Q18078 EMBL-EBI
WormBase CE29179 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39173 Hypothetical protein C18B2.2 [Caenorhabditis elegans] ref|NP_508623.1| C18B2.2 [Caenorhabditis elegans] sp|Q18078|YXT2_CAEEL Hypothetical protein C18B2.2 in chromosome X 0.0
blast T15553 hypothetical protein C18B2.2 - Caenorhabditis elegans 1.0E-152
blast CAE68455 Hypothetical protein CBG14245 [Caenorhabditis briggsae] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 7.6E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508623.1 1 7-29
C18B2.2 1 7-29
GENEFINDER00000016054 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:176683_AT
gtgacgtagttcaaccacgtgttttaaaaggaaccgctcgagagttttgcaacaacacag
atcactgtattcgcccatttttaaaccatgagaccagatatcgagtcgcgccggattaca
aaatggcccactgtgtagttcacaagagtatgtctacggttataaccgggatctggtgtt
atttgttcaatagaaaccgttttgtgagagtcgataagcaaatgaacatgtccgaatggg
ataaagaatcgctctgccgaggcgacaacacatttcgtcatttgaagagtcttcagaaaa
aatataatgcgagtgaaatgactggatggagtttgtcaatgataacacgagatcccattg
acagattcatatcgggttatgtggatagatgcataagagtggctgagggaccgagtccgt
gcaacggatgcgataagaatatgacatgcttcattttgagcgagtatgaaagattcaaaa
agcaagcccacaaaggggttctcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACGTAGTTCAACCACGTGTTTT 196 481 233 Antisense
GGAACCGCTCGAGAGTTTTGCAACA 687 529 262 Antisense
TCACTGTATTCGCCCATTTTTAAAC 283 625 294 Antisense
AGATATCGAGTCGCGCCGGATTACA 99 65 328 Antisense
AAAATGGCCCACTGTGTAGTTCACA 704 125 352 Antisense
AAAGAATCGCTCTGCCGAGGCGACA 306 121 475 Antisense
GGCGACAACACATTTCGTCATTTGA 494 541 493 Antisense
GATAACACGAGATCCCATTGACAGA 308 423 573 Antisense
TAAGAGTGGCTGAGGGACCGAGTCC 289 637 626 Antisense
GGACCGAGTCCGTGCAACGGATGCG 601 523 640 Antisense
GCAAGCCCACAAAGGGGTTCTCACA 163 319 714 Antisense
Sequence Source Affymetrix Proprietary Database