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[176682_at]

Description F35B3.7 /REP_DB=WormBase Gene ID /WP=CE07174 /GB=AAK68378.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 06      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 620.9
(2.3)
P 		338.7
(-1.8)
P 		256.9
(-3)
P 		669
(3)
P 		412
B 625.9
(2.5)
P 		412.5
(-0.9)
P 		278.9
(-3)
P 		655
(3)
P 		376
C 609.7
(3)
P 		343.8
(-1.7)
P 		269.5
(-3)
P 		522.3
(1.5)
P 		340
avr 618.8
(3) 		365
(-1.3) 		268.4
(-3) 		615.4
(2.9) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 479.9
(3)
P 		351.1
(-0)
P 		342.6
(-0.2)
P 		295.8
(-1.3)
P 		240.7
(-2.6)
P 		223
(-3)
P 		257
B 555.5
(3)
P 		416.4
(0.3)
P 		331.9
(-1.3)
P 		299
(-1.9)
P 		240.9
(-3)
P 		250.8
(-2.8)
P 		315
C 396.6
(2.1)
P 		429.2
(3)
P 		301.4
(-0.2)
P 		431.2
(3)
P 		189
(-3)
P 		249.4
(-1.5)
P 		242
avr 477.3
(3) 		398.9
(1.1) 		325.3
(-0.6) 		342
(-0.2) 		223.5
(-3) 		241.1
(-2.6) 		254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 226.1
(3)
P 		73.5
(-2.8)
P 		67.2
(-3)
P 		97.9
(-1.8)
P 		159
B 199.6
(3)
P 		101.9
(-1.3)
P 		64.6
(-3)
P 		139.6
(0.3)
P 		135
C 201.8
(3)
P 		98.9
(-2.4)
P 		93.9
(-2.7)
P 		88.1
(-3)
P 		114
avr 209.2
(3) 		91.4
(-2.3) 		75.2
(-3) 		108.5
(-1.5) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 88.5
(-0.1)
P 		124.9
(3)
P 		74.6
(-1.3)
P 		75
(-1.2)
P 		72.6
(-1.4)
P 		54.3
(-3)
P 		71
B 193.3
(3)
P 		138.6
(0.1)
P 		80.6
(-2.9)
P 		79.2
(-3)
P 		97.9
(-2)
P 		93.5
(-2.2)
P 		114
C 147
(3)
P 		131
(1.9)
P 		76.7
(-1.9)
P 		86.7
(-1.2)
P 		61.2
(-3)
P 		83.5
(-1.4)
P 		86
avr 142.9
(3) 		131.5
(2) 		77.3
(-3) 		80.3
(-2.7) 		77.2
(-3) 		77.1
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17607
Sequence Type Exemplar sequence
Representative Public ID F35B3.7 NCBI
Target Description F35B3.7 /REP_DB=WormBase Gene ID /WP=CE07174 /GB=AAK68378.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078352(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078352 NCBI Caenorhabditis elegans F35B3.7 (F35B3.7) mRNA, complete cds. 9/11 None
GENEFINDER00000019171 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17035172:17041680:-1 9/11 None
SNAP00000019169 ENSEMBL cdna:SNAP chromosome:CEL140:X:17035235:17038452:-1 9/11 None
F35B3.7 ENSEMBL cdna:known chromosome:CEL140:X:17035119:17042868:-1 gene:F35B3.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17035234-17041786(-) 99.74 100.0
Public Domain and Genome References
Gene Title
Ensembl F35B3.7
Entrez Gene 185257 Entrez gene
SwissProt Q966J7 EMBL-EBI
WormBase CE30967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68378 Hypothetical protein F35B3.7 [Caenorhabditis elegans] ref|NP_510753.2| F35B3.7 [Caenorhabditis elegans] 0.0
blast CAE69708 Hypothetical protein CBG15976 [Caenorhabditis briggsae] 0.0
blast CAE69708 Hypothetical protein CBG15976 [Caenorhabditis briggsae] 1.0E-146
blast AAK68378 Hypothetical protein F35B3.7 [Caenorhabditis elegans] ref|NP_510753.2| F35B3.7 [Caenorhabditis elegans] 1.0E-121
blast CAE69708 Hypothetical protein CBG15976 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:176682_AT
acttctcaccggaacaggttcttagtgctttttcattcattttttgttcaattataaatc
aacaaaagaatgtgctgacaactctgtcttcatcttcgtctggtattcatgtgacgccat
ctcccagcgattcgggtataattgattatgagaatctcattcgggataaggaattggaac
ttcaagagattaggaacaccatggaacagaacgaggaaattatcatcaaggtctaccaag
acaaggaacgagcgtggaaaacagagctggaaggtttgaaatgtagagtgtcggctgctg
aaaaaggagaaaaagctcttcgagaacagctttcgaattgtcaacgccagaatacggcaa
tgtcatcctgcatgcgaacggttcaggaggagaagacaaggttaatgggcaaatgcatcc
aacttgaaagagagcttgacaatctgcataacgtgtctctgaagtctgccggatgtccca
attgttcagttgcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTCACCGGAACAGGTTCTTAG 151 103 941 Antisense
GGTTCTTAGTGCTTTTTCATTCATT 333 507 957 Antisense
GTGCTGACAACTCTGTCTTCATCTT 314 479 1012 Antisense
TCTTCATCTTCGTCTGGTATTCATG 341 617 1027 Antisense
CTGGTATTCATGTGACGCCATCTCC 431 241 1040 Antisense
CCATCTCCCAGCGATTCGGGTATAA 401 271 1057 Antisense
TACGGCAATGTCATCCTGCATGCGA 521 647 1293 Antisense
GAGAGCTTGACAATCTGCATAACGT 572 393 1370 Antisense
ATAACGTGTCTCTGAAGTCTGCCGG 321 25 1388 Antisense
TCTGCCGGATGTCCCAATTGTTCAG 488 609 1405 Antisense
TGTCCCAATTGTTCAGTTGCTTCCA 464 557 1414 Antisense
Sequence Source Affymetrix Proprietary Database