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[176680_at]

Description C45B2.2 /REP_DB=WormBase Gene ID /WP=CE02552 /GB=AAK68246.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 20      6grp_total > 08      4grp_total > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3776
1 2 3 4 range
A 295.7
(-3)
P 		3866.9
(3)
P 		2568.9
(0.8)
P 		282.6
(-3)
M 		3584
B 292.2
(-2.8)
P 		3920.6
(3)
P 		2880
(1.3)
P 		145.1
(-3)
P 		3776
C 292.2
(-2.9)
P 		3852.8
(3)
P 		2772.4
(1.2)
P 		256.5
(-3)
P 		3596
avr 293.4
(-2.9) 		3880.1
(3) 		2740.4
(1.1) 		228.1
(-3) 		3652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1742
1 2 3 4 5 6 range
A 1936.3
(3)
P 		955.1
(-0.7)
P 		1452.4
(1.2)
P 		965
(-0.7)
P 		507.2
(-2.4)
P 		355.6
(-3)
P 		1581
B 1848.6
(3)
P 		719
(-1.4)
P 		1173.9
(0.4)
P 		758.8
(-1.2)
P 		426.6
(-2.5)
P 		296.3
(-3)
P 		1552
C 2038
(3)
P 		832.2
(-1.3)
P 		1426.6
(0.8)
P 		838.4
(-1.3)
P 		429.8
(-2.7)
P 		357.9
(-3)
P 		1680
avr 1941
(3) 		835.4
(-1.1) 		1351
(0.8) 		854.1
(-1.1) 		454.5
(-2.6) 		336.6
(-3) 		1604
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1077
1 2 3 4 range
A 107.7
(-2.5)
P 		839.4
(3)
P 		671.6
(1.7)
P 		41.4
(-3)
M 		798
B 93.2
(-2.6)
P 		968.3
(3)
P 		667.4
(1.1)
P 		30.9
(-3)
P 		937
C 96.7
(-2.7)
P 		1107.7
(3)
P 		966.3
(2.2)
P 		43.2
(-3)
P 		1065
avr 99.2
(-2.6) 		971.8
(3) 		768.4
(1.7) 		38.5
(-3) 		933

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 669
1 2 3 4 5 6 range
A 356.9
(3)
P 		339.7
(2.6)
P 		316.3
(2.1)
P 		244.7
(0.5)
P 		153.1
(-1.5)
P 		86.6
(-3)
P 		270
B 643.2
(3)
P 		239.3
(-1.5)
P 		285.1
(-1)
P 		201
(-2)
P 		173.3
(-2.3)
P 		110.5
(-3)
P 		533
C 755.4
(3)
P 		253.9
(-1.7)
P 		363.1
(-0.7)
P 		168.6
(-2.5)
P 		139.1
(-2.8)
P 		119.8
(-3)
P 		636
avr 585.2
(3) 		277.6
(-0.8) 		321.5
(-0.3) 		204.8
(-1.8) 		155.2
(-2.4) 		105.6
(-3) 		480
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16958
Sequence Type Exemplar sequence
Representative Public ID C45B2.2 NCBI
Target Description C45B2.2 /REP_DB=WormBase Gene ID /WP=CE02552 /GB=AAK68246.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076615 NCBI Caenorhabditis elegans C45B2.2 (C45B2.2) mRNA, complete cds. 11/11 None
SNAP00000012824 ENSEMBL cdna:SNAP chromosome:CEL140:X:6084711:6085059:1 11/11 None
GENEFINDER00000012833 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6084744:6085059:1 9/11 None
C45B2.2 ENSEMBL cdna:known chromosome:CEL140:X:6084711:6085126:1 gene:C45B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6084710-6085059(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45B2.2
Entrez Gene 180877 Entrez gene
SwissProt Q95YC7 EMBL-EBI
WormBase CE02552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68246 Hypothetical protein C45B2.2 [Caenorhabditis elegans] ref|NP_509016.1| C45B2.2 [Caenorhabditis elegans] 2.0E-49
blast AAK68246 Hypothetical protein C45B2.2 [Caenorhabditis elegans] ref|NP_509016.1| C45B2.2 [Caenorhabditis elegans] 3.0E-48
blast CAE68862 Hypothetical protein CBG14825 [Caenorhabditis briggsae] 3.0E-41
blast CAE68862 Hypothetical protein CBG14825 [Caenorhabditis briggsae] 7.0E-41
blast AAK68245 Hypothetical protein C45B2.1 [Caenorhabditis elegans] ref|NP_509017.1| C45B2.1 [Caenorhabditis elegans] 5.0E-37
blast AAK68245 Hypothetical protein C45B2.1 [Caenorhabditis elegans] ref|NP_509017.1| C45B2.1 [Caenorhabditis elegans] 3.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509016.1 1 5-27
C45B2.2 1 5-27
SNAP00000012824 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:176680_AT
gcaattattttggctttcgccatgcttttggcaaccgtcgctgctggaccaggaaaccgt
tacggatggccaagctcttacgagagattccttgagagacaaggagtttgggacttcaac
agacacgaagcccgtgctgattacagaggacgcaagaactacgagcgtgacctccgtgat
cttttcgacgactggaagagacaaacccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTATTTTGGCTTTCGCCATGC 108 323 25 Antisense
TTCGCCATGCTTTTGGCAACCGTCG 404 697 40 Antisense
TGCTGGACCAGGAAACCGTTACGGA 710 529 66 Antisense
AAACCGTTACGGATGGCCAAGCTCT 401 1 78 Antisense
GGCCAAGCTCTTACGAGAGATTCCT 27 545 92 Antisense
GGAGTTTGGGACTTCAACAGACACG 535 515 127 Antisense
AACAGACACGAAGCCCGTGCTGATT 274 135 142 Antisense
GCCCGTGCTGATTACAGAGGACGCA 140 287 154 Antisense
CAAGAACTACGAGCGTGACCTCCGT 23 183 177 Antisense
CTCCGTGATCTTTTCGACGACTGGA 374 233 196 Antisense
GACGACTGGAAGAGACAAACCCAAT 273 379 211 Antisense
Sequence Source Affymetrix Proprietary Database