[Home] | [Total List]

[176679_s_at]

Description C52E2.7 /REP_DB=WormBase Gene ID /WP=CE25831 /GB=AAK67221.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 5
(-3)
A 		50.3
(3)
A 		26.7
(-0.1)
A 		15
(-1.7)
A 		45
B 17.7
(-2.8)
A 		99.4
(3)
A 		14.4
(-3)
A 		15.7
(-2.9)
A 		85
C 49.9
(0.5)
A 		38
(-0.4)
A 		5.5
(-3)
A 		80.9
(3)
A 		75
avr 24.2
(-1.9) 		62.6
(3) 		15.5
(-3) 		37.2
(-0.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 9.1
(-2.7)
A 		17.4
(-1.9)
A 		8.4
(-2.7)
A 		8.1
(-2.8)
A 		5.5
(-3)
A 		73.2
(3)
A 		68
B 45.6
(-0.7)
A 		35.3
(-2)
A 		27.5
(-3)
A 		35.2
(-2)
A 		64
(1.6)
A 		74.6
(3)
A 		47
C 6.7
(-3)
A 		9.2
(-2.8)
A 		14.6
(-2.4)
A 		9.2
(-2.8)
A 		7.4
(-2.9)
A 		85
(3)
A 		78
avr 20.5
(-2.6) 		20.6
(-2.6) 		16.8
(-3) 		17.5
(-2.9) 		25.6
(-2.1) 		77.6
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.8
(-3)
A 		10.9
(3)
A 		7
(0.4)
A 		2.2
(-2.7)
A 		9
B 5.6
(-2.3)
A 		24.5
(3)
A 		3.3
(-3)
A 		3.3
(-3)
A 		21
C 16.5
(3)
A 		10.9
(0.7)
A 		1.9
(-3)
A 		13.6
(1.8)
A 		15
avr 8
(-0.9) 		15.4
(3) 		4.1
(-3) 		6.4
(-1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.7
(-3)
A 		6.2
(-1.3)
A 		1.8
(-3)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		17.8
(3)
A 		16
B 15.9
(-0.4)
A 		11.8
(-1.5)
A 		6.7
(-3)
A 		9.3
(-2.3)
A 		26
(2.5)
A 		27.8
(3)
A 		21
C 2.5
(-2.8)
A 		2.8
(-2.8)
A 		3.7
(-2.6)
A 		1.8
(-3)
A 		2.4
(-2.9)
A 		28.5
(3)
A 		27
avr 6.7
(-2.2) 		6.9
(-2.2) 		4.1
(-3) 		4.4
(-2.9) 		10
(-1.3) 		24.7
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176679_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5102
Sequence Type Exemplar sequence
Representative Public ID C52E2.7 NCBI
Target Description C52E2.7 /REP_DB=WormBase Gene ID /WP=CE25831 /GB=AAK67221.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061693 NCBI Caenorhabditis elegans C52E2.7 (C52E2.7) mRNA, complete cds. 11/11 None
SNAP00000007511 ENSEMBL cdna:SNAP chromosome:CEL140:II:1849444:1850400:-1 11/11 None
GENEFINDER00000007520 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1847101:1850400:-1 10/11 None
C52E2.7 ENSEMBL cdna:known chromosome:CEL140:II:1849432:1850400:-1 gene:C52E2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1849442-1850399(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E2.7
Entrez Gene 259420 Entrez gene
SwissProt Q95Y47 EMBL-EBI
WormBase CE25831 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67221 Hypothetical protein C52E2.7 [Caenorhabditis elegans] ref|NP_494094.1| C52E2.7 [Caenorhabditis elegans] 1.0E-170
blast AAK67220 Hypothetical protein C52E2.6 [Caenorhabditis elegans] ref|NP_494093.3| C52E2.6 [Caenorhabditis elegans] 1.0E-159
blast AAK67221 Hypothetical protein C52E2.7 [Caenorhabditis elegans] ref|NP_494094.1| C52E2.7 [Caenorhabditis elegans] 1.0E-153
blast AAB71075 Hypothetical protein ZK250.6 [Caenorhabditis elegans] ref|NP_494136.1| ZK250.6 [Caenorhabditis elegans] 1.0E-100
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 2.0E-76
blast AAK67220 Hypothetical protein C52E2.6 [Caenorhabditis elegans] ref|NP_494093.3| C52E2.6 [Caenorhabditis elegans] 5.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494094.1 1 46-68
C52E2.7 1 46-68
SNAP00000007511 1 46-68
Sequence
Target Sequence 
>C. ELEGANS:176679_S_AT
gaatttgttggtcgccttggatcttcaggaagttgaaaagttggttatttccaaggagca
tgttgactgcgacgaactgaagggattcaaattcaaaatgattacgatgaacgtgaaaaa
cctaaagatgttcgatctgtactaccgggacgccaaggaaatcagtattgccgatagagc
tatcttcggcgagcagtccagggctctgttctcagagaacttggactgcctggagtttct
cgcagaatgtgtcattggacttgacgatataatagccagcaatgctatcaaaaccaacat
tgctcgcccattctccttttccaatttgaatctgtttctgagacatttcatcaacgggtc
aaatccgagcttaaaggaaatgaatattgctatggaagagggaacttttgagaactacga
aaaagttttgctaaacggtatcaactaccggacgtctaacttttccagaatttatgcaga
tggcagttcgagcaatggtttggagtttcaacaaaacgatagaaccaacgtgatagtatt
tgtggatccaatacgtcgctggttctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTGTTGGTCGCCTTGGATCTT 684 323 306 Antisense
GCATGTTGACTGCGACGAACTGAAG 31 311 363 Antisense
TCTGTACTACCGGGACGCCAAGGAA 335 441 441 Antisense
TAGAGCTATCTTCGGCGAGCAGTCC 121 653 480 Antisense
CAGTCCAGGGCTCTGTTCTCAGAGA 594 207 499 Antisense
TGGACTGCCTGGAGTTTCTCGCAGA 46 549 527 Antisense
TTCTCCTTTTCCAATTTGAATCTGT 314 693 616 Antisense
GTTTCTGAGACATTTCATCAACGGG 245 451 639 Antisense
GTATCAACTACCGGACGTCTAACTT 551 445 743 Antisense
GATGGCAGTTCGAGCAATGGTTTGG 54 407 784 Antisense
GGATCCAATACGTCGCTGGTTCTAT 313 513 849 Antisense
Sequence Source Affymetrix Proprietary Database